Parental gene:

ENSMODG00000001962

Aliases:None
Description:None
Organism:Opossum (Monodelphis domestica)
Coordinates:1:182911827..182941944(+)


>ENSMODG00000001962
ATGGCAGAAAAGTTTGAAAGTCTCATGAACATTCATGGTTTTGATCTGGGCTCTCGGTATATGGACTTAAAACCGCTGGG
TTGTGGTGGCAATGGCTTAGTTTTTTCTGCTGTCGATAATGACTGTGACAAAAGAGTGGCTGTCAAGAAAATTGTTCTTA
CAGATCCCCAGAGTGTTAAACATGCTTTACGCGAAATCAAAATTATTAGAAGACTCGACCATGATAACATTGTGAAAGTA
TTTGAAATTCTTGGTCCCAGTGGAAGCCAGTTAACAGATGATGTGGGCTCTCTGACAGAACTGAACAGTGTTTACATTGT
TCAGGAGTACATGGAGACAGACTTGGCTAATCTGCTAGAGCAGGGCCCTTTATTGGAGGAGCATGCCAGGCTTTTCATGT
ATCAGCTGCTACGTGGGCTCAAGTATATTCATTCTGCAAATGTACTGCACAGAGATCTCAAACCAGCTAATCTTTTCATT
AATACCGAAGACTTGGTGCTGAAGATAGGTGACTTTGGTCTTGCCCGGATCATGGATCCCCATTATTCCCACAAGGGTCA
TCTTTCTGAAGGATTGGTTACTAAATGGTACAGATCTCCACGACTTTTACTTTCTCCTAATAACTATACTAAAGCCATTG
ATATGTGGGCTGCAGGATGCATCTTTGCTGAAATGCTGACTGGGAAAACCCTCTTTGCAGGTGCACATGAACTTGAACAG
ATGCAACTGATTTTAGAATCTATTCCTGTTGTACATGAGGAAGATCGTCAGGAGCTTCTCAGTGTAATCCCAGTTTACAT
AAAAAATGATATGACTGAGCCACACAAACCCTTAACTCAGCTGCTTCCAGGAATTAGTCGTGAAGCACTGGACTTCCTGG
AACAAATTTTGACATTTAGTCCCATGGATCGATTGACCGCAGAAGAAGCTCTGTCCCATCCTTATATGAGCATTTATTCC
TTTCCAATGGATGAACCAATTTCAAGCCATCCTTTTCACATTGAAGATGAAGTTGATGATATTTTGCTCATGGATGAAAC
TCATAGTCATATTTATAATTGGGAGAGGTACCATGATTGTCAGTTTTCAGACCATGACTGGCCTATACATAATAATTTTG
ATATTGAAGAAGTTCAGCGTGACCCAAGGGCTCTTTCTGATGTCACTGATGAAGAGGAAGTCCAAGTAGATCCTCGAAAA
TATTTGGATGGAGATCGTGAAAAGTATCTGAAGGATCCTGCCTTTGATACCCATTTCTCTACTGAGCCTTGTTGGCAATA
TCCAGATCATCATGAAAACAAGTATTGTGATCTGGAATGCAGCCACACTTGTAACTACAAAATGAGGTCGTCATCATATC
TAGATAACTTAGTTTGGAGAGAGAGTGAAGTTAACCATTACTATGAACCCAAACTTATTATAGATCTTTCTAATTGGAAA
GAACAAAGCAAAGAAAAATCTGATAAGAAAGGCAAGTCAAAATGTGAAAGGAATGGATTGGTTAAAGCTCAAATAGCTCT
TGAGGAAGCATCACAGCAACTGGTTGAAAAAGAAAGGGAGAAGAATCAAGGATTTGACTTTGATTCCTTTATTGCAGGAA
CTATTCAACTTAGTTCACAACATGAGTCTACTGATGTTGTTGATAAATTAAATGACTTGAATAGCTCAGTGTCCCAACTA
GAATTGAAAAGTTTGATATCAAAGTCAGTAAGCCGGGAAAAACAGGAAAAAGGAATGGCGAATTTGGCTCAGTTAGAAGC
TTTGTACCAGTCTTCTTGGGACAGCCAGTTTGTGAGTGGTGGGGAGGAATGTTTTCTCATAGATCAGTTTTGTTGTGAAG
TAAGAAAGGATGAACAGATTGAGAAGGAAAACACTTACACCAGTTACTTGGACAAGTTCTTTAGCAGGAAGGAAGATACT
GAAATGCTAGAAACTGAGCCAATAGAGGATGGCAAGTTTGGGGAAAGAGAAAGTGAGGAGGGTTTTCTTAACAATAGTGG
GGAGTTCCTCTTTAACAAGCAGCTTGAGTCTATAGGCATCCCACAGTTTCATAGTCCAGTTGGTTCACCACTTAAATCAA
TACAGGCTACATTAACACCTTCTGCTATGAAATCTTCCCCCCAGATTCCCCATAAAACATACAGCAGCATTCTGAAACAT
CTGAACTAA

Library Parental gene expression (RPM)
SRP007412_brain 14 .30 RPM
SRP007412_cerebellum 12 .73 RPM
SRP007412_heart 4 .78 RPM
SRP007412_kidney 2 .63 RPM
SRP007412_liver 9 .57 RPM
SRP007412_testis 6 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000000962 possible_ortholog 1 retrogene
retro_cjac_2633,
Homo sapiens ENSG00000069956 possible_ortholog 2 retrogenes
retro_hsap_1257, retro_hsap_2519,
Gorilla gorilla ENSGGOG00000004003 possible_ortholog 1 retrogene
retro_ggor_1571,
Monodelphis domestica ENSMODG00000017722 within_species_paralog 1 retrogene
retro_mdom_101,
Nomascus leucogenys ENSNLEG00000006476 possible_ortholog 2 retrogenes
retro_nleu_1441, retro_nleu_2095,
Otolemur garnettii ENSOGAG00000030786 possible_ortholog 1 retrogene
retro_ogar_1827,
Pongo abelii ENSPPYG00000006482 possible_ortholog 2 retrogenes
retro_pabe_1853, retro_pabe_3322,
Pan troglodytes ENSPTRG00000020224 possible_ortholog 3 retrogenes
retro_ptro_1464, retro_ptro_2743, retro_ptro_3045,
Sarcophilus harrisii ENSSHAG00000017091 ortholog_one2many 1 retrogene
retro_shar_445,
Sus scrofa ENSSSCG00000004624 possible_ortholog 1 retrogene
retro_sscr_162,
Tupaia belangeri ENSTBEG00000007876 possible_ortholog 2 retrogenes
retro_tbel_1879, retro_tbel_2946,
Tursiops truncatus ENSTTRG00000016253 possible_ortholog 2 retrogenes
retro_ttru_322, retro_ttru_75,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_63 100.00 99.17
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2. retro_mdom_138 99.86 95.84
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Download FASTA sequences of all ENSMODG00000001962 retrocopies