Parental gene:

SAMM50, ENSMMUG00000015446

Aliases:None
Description:sorting and assembly machinery component 50 homolog [Source:RefSeq peptide;Acc:NP_001248655]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:10:87953605..87996720(+)


>ENSMMUG00000015446
ATGGGGACTGTGCACGCCCGGAGTTTGGAGCCTCTTCCATCAAGTGGACCTGATTTTGGAGGATTAGGAGAAGAAGCTGA
ATTTGTTGAAGTTGAACCTGAAGCTAAACAGGAAATTCTTGAAAACAAAGATGTGGTTGTTCAGCATGTTCATTTTGATG
GACTTGGAAGGACTAAAGATGATATCATCATTTGTGAAATTGGAGATGTTTTCAAGGCCAAAAACCTAATTGAGGTAATG
CGGAAATCTCACGAAGCCCGTGAAAAATTGCTCCGTCTTGGAATTTTTAGACAAGTGGATGTTTTGATTGACACGTGTCA
AGGTGATGATGCACTTCCAAATGGGTTAGATGTTACCTTTGAAGTAACTGAATTAAGGAGATTAACCGGCAGTTATAACA
CCATGGTTGGAAACAATGAAGGCAGTATGGTACTTGGCCTCAAGCTCCCTAATCTTCTTGGTCGCGCAGAGAAGGTGACC
TTTCAGTTTTCCTATGGAACAAAAGAAACTTCGTATGGCCTGTCCTTCTTCAAACCCCGGCCTGGAAACTTCGAAAGAAA
TTTCTCTGTAAACTTATATAAAGTTACTGGACAGTTCCCTTGGAGCTCACTGCGGGAGACGGACAGAGGAATGTCAGCTG
AGTACAGTTTTCCCATATGGAAGACCAGCCACACCGTCAAGTGGGAAGGTGTGTGGCGAGAACTGGGCTGCCTCTCCAGG
ACGGCGTCATTTGCTGTTCGAAAAGAAAGCGGACATTCACTGAAATCATCTCTTTCGCACGCCATGGTCATCGATTCTCG
GAATTCTTCCATCTTACCAAGAAGAGGTGCTTTGCTGAAAGTTAACCAGGAACTGGCAGGCTACACTGGCGGGGATGTGA
GCTTCATCAAAGAAGATTTTGAACTTCAGTTGAACAAGCAACTCATATTTGATTCGGTTTTTTCGGCGTCTCTCTGGGGT
GGGATGTTGGTGCCCATTGGTGATAAGCCATCAAGTATTGCTGATAGGTTTTACCTCGGGGGACCAACCAGCGTCCGCGG
ATTCAGCATGCACAGCATCGGGCCACAGAGTGAAGGAGACTACCTAGGTGGAGAAGCGTACTGGGCTGGCGGCCTGCACC
TCTACACCCCATTACCTTTCCGGCCAGGCCAGGGCGGTTTTGGAGAACTTTTCCGAACACACTTCTTTCTCAACGCAGGA
AACCTCTGCAACCTCAACTATGGGGAGGGCCCCAAAGCTCACATTCGTAAGCTGGCTGAGTGCATCCGCTGGTCATACGG
GGCCGGGATCGTCCTCAGGCTTGGCAACATCGCTCGGCTGGAACTTAATTACTGCATCCCCATGGGAGTACAGACGGGCG
ACAGGATATGTGATGGCGTCCAGTTTGGAGCTGGGATAAGGTTCCTGTAG

Library Parental gene expression (RPM)
SRP007412_brain 30 .25 RPM
SRP007412_brain_prefrontal_cortex 36 .89 RPM
SRP007412_cerebellum 29 .32 RPM
SRP007412_heart 61 .59 RPM
SRP007412_kidney 57 .04 RPM
SRP007412_liver 83 .80 RPM
SRP007412_testis 42 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015070 ortholog_one2one 2 retrogenes
retro_cjac_2277, retro_cjac_605,
Homo sapiens ENSG00000100347 ortholog_one2one 1 retrogene
retro_hsap_4233,
Nomascus leucogenys ENSNLEG00000015693 ortholog_one2one 1 retrogene
retro_nleu_1035,
Pongo abelii ENSPPYG00000011918 ortholog_one2one 1 retrogene
retro_pabe_3404,
Pan troglodytes ENSPTRG00000014483 ortholog_one2one 1 retrogene
retro_ptro_2876,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1152 63.24 53.30
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Download FASTA sequences of all ENSMMUG00000015446 retrocopies