Parental gene:

SAMM50, ENSG00000100347

Aliases:SAMM50, OMP85, SAM50, TOB55, TRG-3, YNL026W
Description:sorting and assembly machinery component 50 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24276]
Organism:Human (Homo sapiens)
Coordinates:22:44351300..44406411(+)


>ENSG00000100347
ATGGGGACTGTGCACGCCCGGAGTTTGGAGCCTCTTCCATCAAGTGGACCTGATTTTGGAGGATTAGGAGAAGAAGCTGA
ATTTGTTGAAGTTGAGCCTGAAGCTAAACAGGAAATTCTTGAAAACAAAGATGTGGTTGTTCAACATGTTCATTTTGATG
GACTTGGAAGGACTAAAGATGATATCATCATTTGTGAAATTGGAGATGTTTTCAAGGCCAAAAACCTAATTGAGGTAATG
CGGAAATCTCATGAAGCCCGTGAAAAATTGCTCCGTCTTGGAATTTTTAGACAAGTGGATGTTTTGATTGACACATGTCA
AGGTGATGACGCACTTCCAAATGGGTTAGACGTTACCTTTGAAGTAACTGAATTGAGGAGATTAACGGGCAGTTATAACA
CCATGGTTGGAAACAATGAAGGCAGTATGGTACTTGGCCTCAAGCTTCCTAATCTTCTTGGTCGTGCAGAAAAGGTGACC
TTTCAGTTTTCCTATGGAACAAAAGAAACTTCGTATGGCCTGTCCTTCTTCAAACCACGGCCCGGAAACTTCGAAAGAAA
TTTCTCTGTAAACTTATATAAAGTTACTGGACAGTTCCCTTGGAGCTCACTGCGGGAGACGGACAGAGGAATGTCAGCTG
AGTACAGTTTTCCCATATGGAAGACCAGCCACACTGTCAAGTGGGAAGGCGTATGGCGAGAACTGGGCTGCCTCTCAAGG
ACGGCGTCATTTGCTGTTCGAAAAGAAAGCGGACATTCACTGAAATCATCTCTTTCGCACGCCATGGTCATCGATTCTCG
GAATTCTTCCATCTTACCAAGGAGAGGTGCTTTGCTGAAAGTTAACCAGGAACTGGCAGGCTACACTGGCGGGGATGTGA
GCTTCATCAAAGAAGATTTTGAACTTCAGTTGAACAAGCAACTCATATTTGATTCAGTTTTTTCAGCGTCTTTCTGGGGC
GGAATGTTGGTACCCATTGGTGATAAGCCGTCAAGCATTGCTGATAGGTTTTACCTTGGGGGACCCACAAGCATCCGCGG
ATTCAGCATGCACAGCATCGGGCCACAGAGCGAAGGAGACTACCTAGGTGGAGAAGCGTACTGGGCCGGCGGCCTGCACC
TCTACACCCCATTACCTTTCCGGCCAGGCCAGGGTGGCTTTGGAGAACTTTTCCGAACACACTTCTTTCTCAACGCAGGA
AACCTCTGCAACCTCAACTATGGGGAGGGCCCCAAAGCTCATATTCGTAAGCTGGCTGAGTGCATCCGCTGGTCGTACGG
GGCCGGGATTGTCCTCAGGCTTGGCAACATCGCTCGGTTGGAACTTAATTACTGCGTCCCCATGGGAGTACAGACAGGCG
ACAGGATATGTGATGGCGTCCAGTTTGGAGCTGGGATAAGGTTCCTGTAG

Library Parental gene expression (RPM)
bodymap2_adipose 87 .40 RPM
bodymap2_adrenal 43 .72 RPM
bodymap2_brain 35 .30 RPM
bodymap2_breast 83 .91 RPM
bodymap2_colon 39 .62 RPM
bodymap2_heart 46 .30 RPM
bodymap2_kidney 35 .38 RPM
bodymap2_liver 29 .61 RPM
bodymap2_lung 13 .77 RPM
bodymap2_lymph_node 25 .89 RPM
bodymap2_ovary 51 .74 RPM
bodymap2_prostate 41 .97 RPM
bodymap2_skeletal_muscle 72 .93 RPM
bodymap2_testis 52 .81 RPM
bodymap2_thyroid 46 .70 RPM
bodymap2_white_blood_cells 38 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015070 ortholog_one2one 2 retrogenes
retro_cjac_2277, retro_cjac_605,
Macaca mulatta ENSMMUG00000015446 ortholog_one2one 1 retrogene
retro_mmul_1152,
Nomascus leucogenys ENSNLEG00000015693 ortholog_one2one 1 retrogene
retro_nleu_1035,
Pongo abelii ENSPPYG00000011918 ortholog_one2one 1 retrogene
retro_pabe_3404,
Pan troglodytes ENSPTRG00000014483 ortholog_one2one 1 retrogene
retro_ptro_2876,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4233 65.76 99.57
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSG00000100347 retrocopies