Parental gene:

RPE, ENSLACG00000002800

Aliases:None
Description:Ribulose-phosphate 3-epimerase [Source:UniProtKB/TrEMBL;Acc:H3A0F4]
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH127106.1:59842..78315(-)


>ENSLACG00000002800
ATGGCGGGCTGTGTTTGCAAGATTGGGCCTTCCATCCTGAATAGCGACCTGGCATGTTTGGGAAACGAATGTAAACGGAT
GCTGGAGTGTGGAGCTGACTTTCTGCATCTAGATGTGATGGACGGGCATGCTGTCTTGAAATGCACATTCCTGGGTCATT
GGTTGGTTAAAGATACCTTTGTAAGAAAACAAAAATTGAGCAATAGTTTTTTTTACATGCACATGATGGTTGCCAAGCCA
GAGCAGTGGGTGAAGCCAATGGCAGCAGCTGGAGCTAACCAGTATACTTTCCATCTGGAGGCTACAGACAATCCTGGAGC
TCTTATTAAAGACATCCGGGAGAATAGTATGAAGGTGGGTCTGGCTATCAAACCAGGAACAACAGTGGAGTATTTGGCTC
CATGGGCTAATCAGATCGATATGGCATTGGTTATGACAGTGGAACCAGGGTTTGGAGGTCAAACGTTCATGGAAGACATG
ATGCCAAAGGTTAGCTGGTTAAGAACACAATTTCCTTCTTTGGATATAGAAGTAGACGGTGGAGTGGGTCCTGATACAAT
TAGTAAATGTGCAGAAGCTGGTGCCAACATGATAGTATCTGGCAGTGCAGTTATGAAAAGTGATGACCCCAGATCGGTGA
TCAATCTTTTAAGGAATGTGTGTGTGGAAGCCGTTCAGAAACGCTGTCTTGACCGATGA

Library Parental gene expression (RPM)
DRP000627_gill 6 .47 RPM
DRP000627_kidney 5 .16 RPM
DRP000627_pectoral_fin 8 .46 RPM
DRP000627_pelvic_fin 13 .60 RPM
DRP000627_pharynx 5 .22 RPM
DRP000627_tail_muscle 4 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004965 ortholog_one2one 3 retrogenes
retro_amel_1327, retro_amel_1363, retro_amel_827,
Bos taurus ENSBTAG00000047806 ortholog_one2one 2 retrogenes
retro_btau_343, retro_btau_815,
Canis familiaris ENSCAFG00000013811 ortholog_one2one 3 retrogenes
retro_cfam_1441, retro_cfam_1596, retro_cfam_1623,
Choloepus hoffmanni ENSCHOG00000001110 ortholog_one2one 5 retrogenes
retro_chof_1534, retro_chof_2386, retro_chof_392, retro_chof_492, retro_chof_574,
Callithrix jacchus ENSCJAG00000010822 ortholog_one2one 2 retrogenes
retro_cjac_1199, retro_cjac_1560,
Dasypus novemcinctus ENSDNOG00000003193 ortholog_one2one 1 retrogene
retro_dnov_789,
Equus caballus ENSECAG00000000002 ortholog_one2one 3 retrogenes
retro_ecab_245, retro_ecab_446, retro_ecab_562,
Homo sapiens ENSG00000197713 ortholog_one2one 5 retrogenes
retro_hsap_133, retro_hsap_2553, retro_hsap_2620, retro_hsap_3330, retro_hsap_620,
Loxodonta africana ENSLAFG00000014127 ortholog_one2one 2 retrogenes
retro_lafr_675, retro_lafr_729,
Microcebus murinus ENSMICG00000009953 ortholog_one2one 4 retrogenes
retro_mmur_1380, retro_mmur_268, retro_mmur_393, retro_mmur_713,
Macaca mulatta ENSMMUG00000010513 ortholog_one2many 2 retrogenes
retro_mmul_366, retro_mmul_618,
Monodelphis domestica ENSMODG00000015827 ortholog_one2one 6 retrogenes
retro_mdom_1181, retro_mdom_1676, retro_mdom_449, retro_mdom_490, retro_mdom_505, retro_mdom_667,
Mustela putorius furo ENSMPUG00000007948 ortholog_one2one 2 retrogenes
retro_mputfur_1066, retro_mputfur_1280,
Nomascus leucogenys ENSNLEG00000007172 ortholog_one2one 3 retrogenes
retro_nleu_2263, retro_nleu_448, retro_nleu_638,
Oryctolagus cuniculus ENSOCUG00000016995 ortholog_one2one 1 retrogene
retro_ocun_768,
Otolemur garnettii ENSOGAG00000002778 ortholog_one2one 1 retrogene
retro_ogar_2673,
Pongo abelii ENSPPYG00000013132 ortholog_one2many 4 retrogenes
retro_pabe_1052, retro_pabe_1878, retro_pabe_2340, retro_pabe_555,
Pteropus vampyrus ENSPVAG00000014452 ortholog_one2one 2 retrogenes
retro_pvam_217, retro_pvam_636,
Sus scrofa ENSSSCG00000016152 ortholog_one2many 1 retrogene
retro_sscr_825,
Ictidomys tridecemlineatus ENSSTOG00000010322 ortholog_one2many 1 retrogene
retro_itri_1750,
Tarsius syrichta ENSTSYG00000003304 ortholog_one2one 5 retrogenes
retro_tsyr_113, retro_tsyr_1153, retro_tsyr_1663, retro_tsyr_2129, retro_tsyr_546,
Tursiops truncatus ENSTTRG00000000908 ortholog_one2one 1 retrogene
retro_ttru_158,
Vicugna pacos ENSVPAG00000011585 ortholog_one2one 1 retrogene
retro_vpac_91,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_21 81.36 50.86
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Download FASTA sequences of all ENSLACG00000002800 retrocopies