Parental gene:

LSM12, ENSG00000161654

Aliases:LSM12, PNAS-135
Description:LSM12 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26407]
Organism:Human (Homo sapiens)
Coordinates:17:42112002..42144987(-)


>ENSG00000161654
ATGGCGGCTCCTCCGGGCGAGTACTTCAGCGTTGGGAGCCAGGTGTCGTGCCGGACGTGCCAGGAGCAGCGGCTGCAGGG
CGAGGTGGTAGCCTTTGACTACCAATCCAAAATGCTGGCTTTAAAATGTCCCTCTTCCAGTGGAAAGCCCAACCATGCAG
ACATCTTGCTCATAAACTTACAGTATGTTTCAGAAGTGGAAATAATTAATGACCGAACAGAAACCCCTCCTCCCCTAGCT
TCACTCAATGTTAGTAAGCTTGCCAGCAAAGCACGGACAGAGAAGGAGGAGAAGCTGAGCCAGGCCTATGCAATCAGTGC
TGGTGTCTCTCTAGAGGGCCAGCAGCTCTTCCAGACCATTCACAAGACCATTAAAGACTGTAAATGGCAAGAAAAAAACA
TCGTAGTCATGGAAGAAGTTGTTATTACACCCCCATATCAAGTGGAAAACTGTAAAGGCAAAGAGGGGAGTGCACTGAGC
CATGTACGCAAAATAGTTGAAAAACATTTTAGAGACGTGGAAAGCCAAAAGATACTGCAACGTTCACAAGCCCAGCAACC
ACAGAAGGAGGCTGCCCTGTCATCCTGA

Library Parental gene expression (RPM)
bodymap2_adipose 9 .26 RPM
bodymap2_adrenal 7 .74 RPM
bodymap2_brain 4 .69 RPM
bodymap2_breast 6 .52 RPM
bodymap2_colon 5 .88 RPM
bodymap2_heart 6 .78 RPM
bodymap2_kidney 6 .45 RPM
bodymap2_liver 7 .82 RPM
bodymap2_lung 9 .58 RPM
bodymap2_lymph_node 7 .66 RPM
bodymap2_ovary 8 .85 RPM
bodymap2_prostate 7 .24 RPM
bodymap2_skeletal_muscle 20 .21 RPM
bodymap2_testis 11 .14 RPM
bodymap2_thyroid 5 .80 RPM
bodymap2_white_blood_cells 12 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014379 ortholog_one2one 2 retrogenes
retro_cfam_1843, retro_cfam_312,
Echinops telfairi ENSETEG00000008374 ortholog_one2many 1 retrogene
retro_etel_21,
Felis catus ENSFCAG00000029083 ortholog_one2one 1 retrogene
retro_fcat_787,
Loxodonta africana ENSLAFG00000005202 ortholog_one2one 1 retrogene
retro_lafr_906,
Macropus eugenii ENSMEUG00000007501 ortholog_one2one 1 retrogene
retro_meug_1462,
Macaca mulatta ENSMMUG00000006804 ortholog_one2one 1 retrogene
retro_mmul_3,
Mus musculus ENSMUSG00000020922 ortholog_one2one 1 retrogene
retro_mmus_2683,
Otolemur garnettii ENSOGAG00000010489 ortholog_one2one 2 retrogenes
retro_ogar_1771, retro_ogar_2447,
Oryzias latipes ENSORLG00000011310 ortholog_one2many 1 retrogene
retro_olat_12,
Rattus norvegicus ENSRNOG00000020894 ortholog_one2one 1 retrogene
retro_rnor_2845,
Tupaia belangeri ENSTBEG00000012523 ortholog_one2many 2 retrogenes
retro_tbel_3062, retro_tbel_60,
Vicugna pacos ENSVPAG00000011145 ortholog_one2one 1 retrogene
retro_vpac_627,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4041 100.00 100.00
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Download FASTA sequences of all ENSG00000161654 retrocopies