Parental gene:

EEF1A1, ENSG00000156508

Aliases:EEF1A1, CCS-3, CCS3, EE1A1, EEF-1, EEF1A, EF-Tu, EF1A, GRAF-1EF, HNGC:16303, LENG7, PTI1, eEF1A-1
Description:eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:3189]
Organism:Human (Homo sapiens)
Coordinates:6:74225472..74233520(-)


>ENSG00000156508
ATGGGAAAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTCGGGCAAGTCCACCACTACTGGCCATCT
GATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCT
TCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTT
GAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGAGACTTTATCAAAAACATGATTACAGGGACATC
TCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCC
GAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCA
CCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACAC
AGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGAT
GGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGT
CCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGT
GGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAA
TGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTT
CGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCT
GAACCATCCAGGCCAAATAAGCGCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTG
AGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCC
ATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCG
TGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGT
CTGCCCAGAAAGCTCAGAAGGCTAAATGA

Library Parental gene expression (RPM)
bodymap2_adipose 5264 .08 RPM
bodymap2_adrenal 4408 .93 RPM
bodymap2_brain 1165 .02 RPM
bodymap2_breast 3630 .18 RPM
bodymap2_colon 6218 .58 RPM
bodymap2_heart 698 .42 RPM
bodymap2_kidney 2811 .08 RPM
bodymap2_liver 1314 .04 RPM
bodymap2_lung 6336 .68 RPM
bodymap2_lymph_node 5735 .42 RPM
bodymap2_ovary 7786 .50 RPM
bodymap2_prostate 8544 .31 RPM
bodymap2_skeletal_muscle 972 .29 RPM
bodymap2_testis 3096 .81 RPM
bodymap2_thyroid 4724 .61 RPM
bodymap2_white_blood_cells 9598 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014534 ortholog_one2one 3 retrogenes
retro_btau_114, retro_btau_115, retro_btau_192,
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
retro_cfam_1007,
Equus caballus ENSECAG00000020363 ortholog_one2one 2 retrogenes
retro_ecab_66, retro_ecab_93,
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
retro_ecab_802,
Felis catus ENSFCAG00000030977 ortholog_one2one 14 retrogenes
retro_fcat_1021, retro_fcat_1388, retro_fcat_1569, retro_fcat_1683, retro_fcat_1825, retro_fcat_184, retro_fcat_1915, retro_fcat_220, retro_fcat_221, retro_fcat_334, retro_fcat_515, retro_fcat_566, retro_fcat_688, retro_fcat_737,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Myotis lucifugus ENSMLUG00000013537 ortholog_one2many 24 retrogenes
retro_mluc_110, retro_mluc_1252, retro_mluc_1392, retro_mluc_1430, retro_mluc_1558, retro_mluc_1628, retro_mluc_1644, retro_mluc_1853, retro_mluc_1901, retro_mluc_1910, retro_mluc_2071, retro_mluc_2148, retro_mluc_2154, retro_mluc_2277, retro_mluc_2355, retro_mluc_2358, retro_mluc_2359, retro_mluc_2391, retro_mluc_441, retro_mluc_470, retro_mluc_677, retro_mluc_950, retro_mluc_956, retro_mluc_966,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mustela putorius furo ENSMPUG00000003816 ortholog_one2many 6 retrogenes
retro_mputfur_1514, retro_mputfur_1643, retro_mputfur_220, retro_mputfur_502, retro_mputfur_844, retro_mputfur_862,
Mustela putorius furo ENSMPUG00000004271 ortholog_one2many 10 retrogenes
retro_mputfur_1179, retro_mputfur_1276, retro_mputfur_1351, retro_mputfur_1394, retro_mputfur_284, retro_mputfur_355, retro_mputfur_474, retro_mputfur_678, retro_mputfur_920, retro_mputfur_973,
Oryctolagus cuniculus ENSOCUG00000008481 ortholog_one2one 3 retrogenes
retro_ocun_1102, retro_ocun_187, retro_ocun_71,
Ochotona princeps ENSOPRG00000016685 ortholog_one2one 6 retrogenes
retro_opri_1049, retro_opri_1076, retro_opri_1197, retro_opri_298, retro_opri_325, retro_opri_383,
Sus scrofa ENSSSCG00000004489 ortholog_one2one 4 retrogenes
retro_sscr_169, retro_sscr_492, retro_sscr_612, retro_sscr_758,
Tursiops truncatus ENSTTRG00000000114 ortholog_one2one 19 retrogenes
retro_ttru_1020, retro_ttru_1150, retro_ttru_1196, retro_ttru_1349, retro_ttru_1351, retro_ttru_1368, retro_ttru_1384, retro_ttru_1810, retro_ttru_1861, retro_ttru_1876, retro_ttru_384, retro_ttru_390, retro_ttru_401, retro_ttru_523, retro_ttru_664, retro_ttru_698, retro_ttru_844, retro_ttru_941, retro_ttru_998,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_190 95.24 100.00
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2. retro_hsap_278 83.60 94.59
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3. retro_hsap_283 73.67 67.32
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4. retro_hsap_363 72.65 74.68
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5. retro_hsap_989 84.67 91.34
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6. retro_hsap_1093 89.70 79.65
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7. retro_hsap_1181 84.72 61.90
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8. retro_hsap_1567 85.77 53.03
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9. retro_hsap_1671 82.69 60.82
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10. retro_hsap_2302 94.96 51.52
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11. retro_hsap_2455 64.88 92.64
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12. retro_hsap_2637 88.96 70.13
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13. retro_hsap_2712 83.06 53.46
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14. retro_hsap_2896 87.96 100.00
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15. retro_hsap_2920 65.23 54.55
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16. retro_hsap_2967 95.00 99.57
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17. retro_hsap_2983 86.64 100.00
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18. retro_hsap_3239 73.38 66.45
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19. retro_hsap_3291 96.32 100.00
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20. retro_hsap_3314 93.75 76.19
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21. retro_hsap_3701 71.14 52.81
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22. retro_hsap_3706 73.90 68.83
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23. retro_hsap_3758 75.87 86.58
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24. retro_hsap_3825 99.14 100.00
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25. retro_hsap_3917 87.47 100.00
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26. retro_hsap_4220 99.57 100.00
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27. retro_hsap_4730 73.85 60.82
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Download FASTA sequences of all ENSG00000156508 retrocopies