Parental gene:

CKAP2L, ENSFCAG00000028904

Aliases:None
Description:cytoskeleton associated protein 2-like [Source:HGNC Symbol;Acc:26877]
Organism:Cat (Felis catus)
Coordinates:A3:104755759..104787424(+)


>ENSFCAG00000028904
AGCCCCGGCCCTGGCCCAGGGCTTGCCTGTTTTGCAGAAGAGCGGCAGAGAAAGCTCCAGGAGTACCTAGCAGCCAAGGG
AAAACTGAAATGCCAAAACACCAAGCCTTACCTAAAAGCCAAGAATAATTGTCTGAATCCTCCACCTTCTAAATCTACTA
CTGTACCCAAAAAGAATGTTACCAATTATGTTGCTTTGCCTGTCAAAGCTACAAGACCCATCAGCACTGAACTCCAGCCC
CGACCTCCCAAAGGCCCAGGATCCCAGAAGCCAAAGTTGGAGCCACCAAAACTTCTGGGCAAAAGGCTGACTTCAGGATG
TATTTCTTCTAACTTAAACTCTAAGCCTTCCAGCAATCGTCAACAACACCATGAAGAGGGATCATCCACTACTGGCGAAT
TGCCTACAGAAACTATGGGGTCACTTAATATACAGGAACTGAAAACTGCAAAGCAGCAGGTAGCAGATCAAGGAAATACT
AAGTGTGCAGACTCTGTGGACTGTAACCATGTTGAAAATGAATCCTTAGATAGCTTTCTAAAAGAGATAAACAAAGAAAA
CTTGCCCCAAACCTTACTAGACTCTGAAAGGAAGTCAAATCCTGAATTATGGACAATATGTAAGCCAAAGACTAATTCTT
ATAATCAAACCAAGAGCAGTTTGGCTCCTAAACAAGCCTTGGGCAAAAGTTCTGGGAATAGTGCTTTTCTGAAAGACCGA
GTTAATAAACAATTTGTTGGAAAAACACAAATTAGGATTCCACCAGTAAAGTCACAGCAACTCTCTAGAGGAACAAACCT
TGCAAGACCAGGAGAAAAACTCCCAAAGACGGCTCCCTATCACTACGTTCAGACCCTTAGTAGGACTCAAGCATCAAGGA
AACCAGTGGTCAAGGACATAAAGGATATAAAGGTTAATAGGGGTAAATACGAAAGACCAAATGAAACTAAGGTACAGTCA
CACACTGTTACTGAACAGAAAGTAAAACACACCAAACCCCGGACATGCCCTAGTGTGCTTCCGGGAGGCTGTAACAACAG
ACATCCAAACACTAGGCAAGATCAGAAATCCACTCAACCTTGTTGTAGACCTCGGACATCATGTGCACTACAAAAATCAA
AAGCCATAAGCCAAAGGCCTAATTTGATAGTTGGCACTTTCAATTCAGTCGTTCCAAGCACCCCTAACATAACAGCAAAT
GGAACCAATGGGAATAGATGCAGCAACAGCTGTCAACAAAAAGCACAGATTTTGGACACCAAGTTGAAAAAGACTCTTCC
CCAGAACCATTTTCTCAATAAGACAGCTCCCAAAACTCAAGCTGGTAACAAAACCATACATGGAGGAAGAGTCCCAAATG
GGACCCAAACTAATCCAAATATTAAGAAGAAGATCACAGCAGAGGACCGAAGGAAACAACTGGAAGAATGGCAGAAATCT
AAGGGGAAAATCTATAAACGGCCTCCTATGGAACTTAAAACAAAAAGAAAAATAATAGAGGAAATGAATATTTCATTCTG
GAAGAGTATGGAAAAAGAAGATGAAGAAAAGAAAGCACAACTTGAACTGTCCAATAAAATTAACAACACTCTGACAGAAT
GTCTGCAGTTCATTGAAAGGGGTATGCTTTCTAATGAAGTATTTACCATATTGTCCAGTATTCCTGAGGCCAAAAAATTT
GCTAAATTCTGGATCTGCAAAGCAAAGTTATTGGCCAGTAAAGGTACCTTTGATGTCATTGGGCTGTATGAAGAGGCCAT
TCGAAATGGGGCAACACCAATACAAGAGTTGCGTGAAGTTGTTCTTAATATTTTGCAAGACACAAACAGAACCACAGAAG
GAGTTACCTCTGACTCTTCAGTTGCTGAGATGAATATAACGTCAATAGAAGAGCTGGCCAATAAAACGGAATCTGAAAAG
TCTTGTCTTTCTCTAAAAGAGAGAGAACAGGTTACAGGAACACCCCAAATAACCAAGGCAGAGCAGGATAACCATCCTGG
TATCAAATTACAGGTGGCCCCCATCCCTCGGATAAGTGGAATAGCAGAAGTGCATGACATGAAGCTGATCACTCCTGTGC
GCCGGTCGGCGAGGATTGAGCGAGCGGTGTCCCGCTACCCGGAAATGCTGCAGGAACACGATTTGGTGGTGGCTTCTCTT
AACGAGCTGTTAGAAGTGGAAGAAACAGAGTGTTTTATATTCCGTAAAAATGAGGCTTTGCCTGTCACATTAGGGTTTAA
AATCCTTGAGTCATAA

Library Parental gene expression (RPM)
SRP017611_brain 0 .34 RPM
SRP017611_kidney 0 .93 RPM
SRP017611_liver 1 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000007242 ortholog_one2one 1 retrogene
retro_cfam_858,
Cavia porcellus ENSCPOG00000010435 ortholog_one2many 2 retrogenes
retro_cpor_229, retro_cpor_528,
Felis catus ENSFCAG00000010021 within_species_paralog 1 retrogene
retro_fcat_1770,
Mustela putorius furo ENSMPUG00000009729 possible_ortholog 1 retrogene
retro_mputfur_1172,
Ochotona princeps ENSOPRG00000012796 ortholog_one2one 1 retrogene
retro_opri_904,
Tupaia belangeri ENSTBEG00000013625 ortholog_one2one 2 retrogenes
retro_tbel_1637, retro_tbel_4436,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_615 72.15 64.98
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Download FASTA sequences of all ENSFCAG00000028904 retrocopies