RetrogeneDB ID: retro_mputfur_1172

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897033.1:5195469..5195750(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000009729
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1172
GTTGTTAATATTTGCCAGACCCAAACAGAATCACAGAGGGAGTGACCTATGCCTTTGTAGTTGCCGAAATGCATATAACA
TCCATAAAAGAGCATGCCAGTAAGAAGGAATTTGAAATGTCTTGTCTTTAAAAGAAAGAGAACGCATTACAGCAATACCC
CCTCCCCCAAATAACCAAGGCAGAAGAGGATAATCATTCTGGTATCAAATTACGAATCATCCCAATTCCTAGAATAAGTG
GAATACCAGAAGTGCAAGGCTTGAAGCTCATCACTCCTGTA

Alignment

ORF - retro_mputfur_1172 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.05 %
• Parental protein coverage: 53.76 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VLNILQ-DQNRTTEGVTSDSPVAETNVTATEELADKTESEKSHLSLKEGE-QVTATPQITKAEQDNHPGI
          V.NI.Q.D.NR.TEGVT....VAE...T...E.A.K.E.E.S.L..KE...Q....PQITKAE.DNH.GI
Retrocopy VVNICQ<DPNRITEGVTYAFVVAEMHITSIKEHASKKEFEMSCL*KKENALQQYPLPQITKAEEDNHSGI

Parental  KLQIAPIPRISGLPEVQDVKLITPV
          KL.I.PIPRISG.PEVQ..KLITPV
Retrocopy KLRIIPIPRISGIPEVQGLKLITPV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1172 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1172 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000007242	1 retrocopy	retro_cfam_858,
Cavia porcellus	ENSCPOG00000010435	2 retrocopies	retro_cpor_229, retro_cpor_528,
Felis catus	ENSFCAG00000028904	1 retrocopy	retro_fcat_615,
Mustela putorius furo	ENSMPUG00000009729	1 retrocopy	retro_mputfur_1172 ,
Mustela putorius furo	ENSMPUG00000017996	1 retrocopy	retro_mputfur_1270,
Ochotona princeps	ENSOPRG00000012796	1 retrocopy	retro_opri_904,
Tupaia belangeri	ENSTBEG00000013625	2 retrocopies	retro_tbel_1637, retro_tbel_4436,