Parental gene:

RDH13, ENSECAG00000023146

Aliases:None
Description:retinol dehydrogenase 13 (all-trans/9-cis) [Source:HGNC Symbol;Acc:19978]
Organism:Horse (Equus caballus)
Coordinates:10:24283047..24297089(-)


>ENSECAG00000023146
ATGAACCGCTACCTCCTGCCGCTGTCCGTGCTGGGCACGGTGGCGGGTGGCGCCGTGCTGCTCAGGGACTATGTCGCTGG
CGGGGCCTGTCCCAGCAAGGCCACCATTCATGGGAAGACCGTCATTGTGACGGGCGCCAACACGGGCATCGGGAAGCAGA
CCGCCTTGGAGCTGGCCAAGAGAGGAGGCAATGTCATTCTGGCCTGTCGAGACATGGAGAAGTGTGAGGCGGCAGCAAAG
GAAATTCGCGGGGAGACCCTTAATCACCGTGTCAATGCGAGGCACCTGGACCTGGCCTCCCTCAGGTCCGTCCGAGAGTT
CGCCACGAAGATCCTTGCAGAGGAAGAGCAGGTGCACGTCCTGGTGAACAACGCGGCCGTGATGCGCTGCCCCCACTGGA
CCACTGAGGACGGCTTCGAGATGCAGTTTGGGGTCAACTACCTGGGTCACTTTCTTTTGACTAACTTACTGCTGGACAAG
CTGAAAGCCTCGGCCCCCTCGCGGATCATCAACCTCTCATCCTTGGCCCATGTTGCTGGGCACATAGACTTTGATGACTT
GAACTGGGAGAAGAGGAAGTATGACACCAAAGCAGCCTACTGCCAGAGTAAGCTGGCCATCGTCCTCTTCACCAAGGAGC
TGAGTCGGCGGCTGCAAGGTACGGGGGTGACCGTCAACGCTCTGCATCCCGGTGTAGCCAGGACGGAGCTGGGCAGACAC
ACAGGCCTGCACAGCTCTGCCTTCTCCAGTTTCATGCTCGGGCCCATCTTCTGGCTGCTGGTGAAGAGCCCCCAGCTGGC
GGCCCAGCCCAGCACCTACCTGGCCGTTGCGGAAGAATTGGAGGGCGTTTCTGGAAAGTACTTTGATGGACTCAAAGAGA
AGGCTCCAGCCCCTGAGGCTGAGGATGAGGAGGTAGCCCGGAGGCTTTGGGCTGAAAGTGCTCACCTGGTGGGCTTGGAG
ATGTCCCATGGGTCCTCTGTGAAGGGACAGCCCCTCCCTAAATAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 0 .47 RPM
SRP021940_cerebellum 1 .77 RPM
SRP021940_embryo 4 .09 RPM
SRP021940_placental_villous 7 .17 RPM
SRP021940_synovial_membrane 3 .46 RPM
SRP021940_testis 2 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003306 ortholog_one2one 1 retrogene
retro_amel_114,
Equus caballus ENSECAG00000015001 within_species_paralog 1 retrogene
retro_ecab_1059,
Ochotona princeps ENSOPRG00000015998 ortholog_one2one 2 retrogenes
retro_opri_286, retro_opri_524,
Petromyzon marinus ENSPMAG00000009095 ortholog_one2one 1 retrogene
retro_pmar_3,
Pongo abelii ENSPPYG00000010398 ortholog_one2one 1 retrogene
retro_pabe_1972,
Pan troglodytes ENSPTRG00000011484 ortholog_one2one 1 retrogene
retro_ptro_1576,
Sorex araneus ENSSARG00000003600 ortholog_one2one 1 retrogene
retro_sara_314,
Tupaia belangeri ENSTBEG00000016531 ortholog_one2one 1 retrogene
retro_tbel_1570,
Drosophila melanogaster FBgn0033203 ortholog_many2many 1 retrogene
retro_dmel_79,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_338 54.33 62.28
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Download FASTA sequences of all ENSECAG00000023146 retrocopies