Parental gene:

PSMB1, ENSDNOG00000019502

Aliases:None
Description:proteasome (prosome, macropain) subunit, beta type, 1 [Source:HGNC Symbol;Acc:9537]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_11175:26984..41451(-)


>ENSDNOG00000019502
ATGTTGTCCTCAGCAGCTATGTACTCGGGTCCCGGCCGAGAACTGGGGATGGAACCTTACAGAGCCGCGGGTCCCTCGCA
GCTTCGCTTTTCGCCCTACGCTTTCAACGGAGGTACTGTATTGGCAATTGCTGGAGAAGATTTTTCAATTGTTGCTTCTG
ACACTCGATTGAGTGAAGGCTTTTCAATTCATACCCGGGACAGCCCCAAGTGTTATAAATTAACAGACAAAACAGTCATT
GGATGCAGCGGTTTTCATGGAGACTGCCTAACACTTACAAAAATTATTGAAGCAAGACTAAAGATGTATAAGCATTCCAA
TAATAAGGCCATGACTACGGGGGCAATTGCTGCAATGCTATCTACAATCCTTTATTCAAGACGCTTCTTTCCATATTATG
TTTACAACATCATCGGCGGACTTGATGAAGAAGGGAAGGGGGCCGTGTACAGCTTTGATCCAGTAGGATCCTACCAGAGA
GACTCCTTCAAGGCCGGAGGCTCGGCAAGTGCCATGTTGCAGCCCCTACTTGACAACCAGGTTGGTTTTAAGAATATGCA
GAATGTGGAGCATGTTCCGCTGTCCCTGGACAGAGCCATGCGGCTGGTGAAAGATGTCTTCATCTCTGCAGCGGAGCGAG
ATGTGTATACTGGAGACGCACTTAAAATCTGCATCGTTACCAAAGAGGGCATCAGCGAGGAGACCATTCCCCTGCGGAAG
GACTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 127 .57 RPM
SRP012922_cerebellum 67 .36 RPM
SRP012922_heart 58 .47 RPM
SRP012922_kidney 75 .57 RPM
SRP012922_liver 60 .84 RPM
SRP012922_lung 110 .88 RPM
SRP012922_quadricep_muscle 63 .70 RPM
SRP012922_spleen 95 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017047 ortholog_one2one 1 retrogene
retro_amel_1066,
Canis familiaris ENSCAFG00000004116 ortholog_one2one 1 retrogene
retro_cfam_2108,
Callithrix jacchus ENSCJAG00000020644 ortholog_one2one 1 retrogene
retro_cjac_632,
Felis catus ENSFCAG00000031269 ortholog_one2one 1 retrogene
retro_fcat_911,
Gorilla gorilla ENSGGOG00000022128 ortholog_one2one 1 retrogene
retro_ggor_1661,
Microcebus murinus ENSMICG00000007469 ortholog_one2one 1 retrogene
retro_mmur_173,
Macaca mulatta ENSMMUG00000019919 ortholog_one2one 1 retrogene
retro_mmul_1135,
Mustela putorius furo ENSMPUG00000007150 ortholog_one2one 1 retrogene
retro_mputfur_1196,
Mus musculus ENSMUSG00000014769 ortholog_one2one 2 retrogenes
retro_mmus_1784, retro_mmus_3664,
Oryctolagus cuniculus ENSOCUG00000007973 ortholog_one2one 2 retrogenes
retro_ocun_1029, retro_ocun_620,
Procavia capensis ENSPCAG00000000344 ortholog_one2one 1 retrogene
retro_pcap_329,
Pongo abelii ENSPPYG00000017191 ortholog_one2many 1 retrogene
retro_pabe_130,
Vicugna pacos ENSVPAG00000006517 ortholog_one2one 1 retrogene
retro_vpac_521,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_2087 83.94 89.63
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Download FASTA sequences of all ENSDNOG00000019502 retrocopies