Parental gene:

NDEL1, ENSCPOG00000012878

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_61:7493215..7530630(+)


>ENSCPOG00000012878
ATGGATGGTGAAGATATACCAAATTTTTCAAGTTTAAAGGAAGAAAATGCTTATTGGAAGGAACTTTCCTTGAAGTATAA
GCAAAGCTTCCAGGAAGCTCGGGATGAGCTGGTTGAATTCCAGGAAGGAAGCAGAGAATTAGAAGCAGAGTTGGAGGCGC
AGTTAGAACAGGCAGAGCAAAGAAACAGAGACCTACAAGCCGATAACCAAAGACTGAAATACGAAGTGGAAGCATTAAAG
GAGAAACTAGAACATCAGTATGCACAGAGCTACAAGCAGGTTTCTGTATTAGAAGACGATTTAAGTCAGACTAGGGCCAT
TAAGGAGCAGCTGCATAAGTACGTGAGAGAGCTGGAGCAGGCCAACGATGACCTGGAGCGAGCCAAACGAGCAACAATAG
TATCCCTGGAAGACTTTGAACAAAGGCTAAATCAGGCCATTGAACGAAATGCGTTTTTAGAAAGTGAACTTGATGAAAAG
GAGTCTTTGTTGGTTTCTGTACAGAGGTTAAAGGATGAAGCACGAGATCTAAGGCAAGAACTAGCGGTTCGGGAAAGACA
ACAGGAAGTGACCCGCAAGTCGGCTCCCAGCTCCCCGACCCTGGACTGTGAGAAGATGGACTCTGCTGTCCAGGCCTCGC
TCTCCTTGCCGGCTACTCCTGTTGGCAAAGGAACGGAAAACAGTTTTCCTTCTCCAAAAGCTATACCAAATGGTTTTGGA
ACCAGTCCACTGACTCCATCAGCTAGGATCTCAGCACTAAACATTGTGGGGGATCTCTTACGGAAAGTGGGGGCTTTAGA
ATCCAAGTTAGCAGCTTGCAGGAATTTTGCAAAGGACCAGGCAGCACGGAAGTCGTATATTTCAGGGAATGTTAACTGTG
GAGTGATGAATAGCAATGGCACCAAGTTCTCTCGATCAGGGCACACATCTTTCTTCGACAAAGGCTCCTCCTCCAGCTGT
GCGATCCGGGCCTCCAGCCGCCGCTTCTCATCCAGCAGTGCGGACCTGGCCGGGCGAGGGGGCAGTGACAGCACA

Library Parental gene expression (RPM)
SRP017611_brain 38 .71 RPM
SRP017611_kidney 19 .68 RPM
SRP017611_liver 7 .09 RPM
SRP040447_lung 19 .55 RPM
SRP040447_skeletal_muscle 15 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000014341 ortholog_one2one 1 retrogene
retro_cjac_4072,
Cavia porcellus ENSCPOG00000019614 within_species_paralog 2 retrogenes
retro_cpor_875, retro_cpor_876,
Pan troglodytes ENSPTRG00000008744 ortholog_one2one 1 retrogene
retro_ptro_2000,
Ictidomys tridecemlineatus ENSSTOG00000027930 ortholog_one2one 1 retrogene
retro_itri_620,
Tursiops truncatus ENSTTRG00000006517 ortholog_one2one 1 retrogene
retro_ttru_1239,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_626 74.26 57.97
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Download FASTA sequences of all ENSCPOG00000012878 retrocopies