Parental gene:

ENSCPOG00000010887

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_129:2436952..2462216(+)


>ENSCPOG00000010887
CAAGAAGGATCACTTTGTGCTCAACACTGCCTGAATAATCTGTTGCAAGGAGAATACTTTAGCCCTGTGGAGTTATCCTC
AATTGCCCACCAGCTGGATGAGGAAGAAAGGATGAGAATGGCAGAAGGAGGCGTTACTAGTGAAGACTATCGCACGTTTT
TACAGCAGCCTTCTGGAAATATGGATGACAGTGGCTTTTTCTCTATTCAAGTTATAAGCAATGCCTTGAAAGTTTGGGGT
TTGGAACTAATCCTGTTCAACAGTCCAGAGTATCAGCGACTCAGGATTGATCCTATAAATGAAAAATCATTTATTTGCAA
TTATAAAGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGCAGTGGTTTAACTTGAATTCTCTCTTGACGGGTCCAG
AATTAATATCAGATACATACCTTGCACTTTTCTTGGCTCAATTACAACAGGAAGGTTATTCTATATTTGTTGTTAAGGGT
GATCTGCCAGATTGTGAAGCTGACCAACTTCTCCAGATGATCAGGGTCCAACAGATGCATCGACCAAAACTCATTGGAGA
AGAGTTAGCACAACTGAAAGAGCAGAGAGTCCTTAAAACAGACCTGGAACAAGTCTTAGAAGGAAATGATGGGTCAGGAA
TGTTAGATGAAGATGAAGAGGATTTGCAGAGGGCACTGGCACTAAGTCGGCAGCAGATTGACATGGAAGATGAAGAAGCA
GATCTTCGCAGGGCTATTCAGCTCAGTATGCAAGGGGGTTCCAGAAATATATCTCAAGATGTTGCACAGACATCAGGCAC
AGATCTTACATTTGAAGAGCTGCGAAGGAGAAGAGAAGCCTACTTTGAAAATTTTCATAAATTAAAAGTAGAACAACTCC
ATGAACATCAGATAACAAGAATACAAAGTGAAAAGCAGCAGCGGGCAGATCCATCAGGACAGGCTTCACAGCCACATGAA
AGGCCAACCACGAGTTCAGGAGCACTTGGGAATGATCTAGGTGATTCTGTGAGTGAAGAAGACATGCTTCAGGCAGCTGT
GACCATGTCTTTAGAAACTGTTACAAATAATTTGAAAACAGAAGGGAAAAAATAG

Library Parental gene expression (RPM)
SRP017611_brain 9 .49 RPM
SRP017611_kidney 9 .42 RPM
SRP017611_liver 10 .88 RPM
SRP040447_lung 9 .46 RPM
SRP040447_skeletal_muscle 2 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005786 ortholog_one2many 2 retrogenes
retro_btau_1652, retro_btau_330,
Choloepus hoffmanni ENSCHOG00000005302 ortholog_one2many 1 retrogene
retro_chof_2238,
Callithrix jacchus ENSCJAG00000018025 possible_ortholog 2 retrogenes
retro_cjac_1724, retro_cjac_375,
Homo sapiens ENSG00000066427 ortholog_one2many 1 retrogene
retro_hsap_89,
Macaca mulatta ENSMMUG00000020751 ortholog_one2many 1 retrogene
retro_mmul_298,
Monodelphis domestica ENSMODG00000002006 ortholog_one2many 2 retrogenes
retro_mdom_1498, retro_mdom_1573,
Nomascus leucogenys ENSNLEG00000017126 ortholog_one2many 1 retrogene
retro_nleu_66,
Pongo abelii ENSPPYG00000006075 ortholog_one2many 1 retrogene
retro_pabe_9,
Pteropus vampyrus ENSPVAG00000015316 possible_ortholog 2 retrogenes
retro_pvam_1201, retro_pvam_587,
Tupaia belangeri ENSTBEG00000008099 ortholog_one2many 3 retrogenes
retro_tbel_102, retro_tbel_2635, retro_tbel_3925,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1460 95.41 77.75
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Download FASTA sequences of all ENSCPOG00000010887 retrocopies