Parental gene:

PCNP, ENSCPOG00000010610

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_35:3680783..3701842(+)


>ENSCPOG00000010610
ATGGCGGACCGAAAGGCGGGAGAGGAGAAGCCTGAGAAGTCCAAGCGAGCTGGAGCCGCCGGAGGACCTGAAGAAGAAGC
AGAAAAACCTGTGAAAACTAAGACTGTTTCTTCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAGCGATCAG
CTGAAGAAGAAGCTGCAGACCTCCCAACAAAGCCTACAAAGATCTCCAAGTTTGGATTTGCCATAGGTAGTCAGACAGCA
AAGAAAGCATCAGCTATATCCATCAAACTTGGATCAAGTAAGCCTAAAGAAACTGTTCCAACTCTTGCTCCAAAAACCCT
TTCAGTAGCAGCAGCTTTTAATGAAGATGAAGATAGTGAACCTGAGGAAATGCCTCCAGAAGCAAAGATGAGGATGAAGA
ATATTGGAAGGGATACACCAACATCAGCTGGACCAAACTCTTTCAATAAAGGAAAGCATGGGTTTTCTGATAACCAGAAG
CTATGGGAACGGAATATAAAATCTCATCTTGGAAATGTCCACGACCAAGACAATTAA

Library Parental gene expression (RPM)
SRP017611_brain 27 .78 RPM
SRP017611_kidney 26 .90 RPM
SRP017611_liver 24 .59 RPM
SRP040447_lung 21 .03 RPM
SRP040447_skeletal_muscle 13 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007972 ortholog_one2one 11 retrogenes
retro_chof_1170, retro_chof_1215, retro_chof_2070, retro_chof_2280, retro_chof_2290, retro_chof_2553, retro_chof_2575, retro_chof_594, retro_chof_651, retro_chof_806, retro_chof_819,
Callithrix jacchus ENSCJAG00000000508 ortholog_one2many 6 retrogenes
retro_cjac_101, retro_cjac_1569, retro_cjac_1722, retro_cjac_3205, retro_cjac_3332, retro_cjac_401,
Dasypus novemcinctus ENSDNOG00000008873 ortholog_one2one 5 retrogenes
retro_dnov_1606, retro_dnov_259, retro_dnov_370, retro_dnov_910, retro_dnov_98,
Gorilla gorilla ENSGGOG00000025423 possible_ortholog 4 retrogenes
retro_ggor_882, retro_ggor_901, retro_ggor_902, retro_ggor_994,
Loxodonta africana ENSLAFG00000005518 ortholog_one2one 2 retrogenes
retro_lafr_1189, retro_lafr_458,
Macaca mulatta ENSMMUG00000017782 possible_ortholog 3 retrogenes
retro_mmul_1312, retro_mmul_1377, retro_mmul_2598,
Mustela putorius furo ENSMPUG00000011696 possible_ortholog 1 retrogene
retro_mputfur_850,
Otolemur garnettii ENSOGAG00000001821 ortholog_one2one 4 retrogenes
retro_ogar_2216, retro_ogar_2465, retro_ogar_3320, retro_ogar_652,
Procavia capensis ENSPCAG00000007007 ortholog_one2one 3 retrogenes
retro_pcap_161, retro_pcap_194, retro_pcap_273,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_443 71.13 78.65
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2. retro_cpor_1335 87.29 100.00
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Download FASTA sequences of all ENSCPOG00000010610 retrocopies