Parental gene:

PSMC1, ENSCPOG00000002424

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_20:32857863..32869014(+)


>ENSCPOG00000002424
CAGGGTCAAAGTCAGAGTGGTGGTCATGGTCCTGGAGGTGGTAAGAAGGATGACAAGAACCTCAAGGACAAGAAAAAGAA
ATATGAACCTCCTGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAAGGACCAGATGCTGCCAGCAAACTGCCAC
TGGTGACGCCTCACACCCAGTGCCGTTTAAAACTACTCAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAG
TTTATTAGAAATCAGGAACAAATGAAGCCGTTAGAAGAAAAGCAAGAGGAGGAAAGGTCAAAGGTGGATGATCTGAGGGG
AACCCCAATGTCGGTAGGAACCTTGGAAGAGATCATTGATGACAATCACGCCATCGTGTCTACATCTGTGGGCTCAGAAC
ACTACGTCAGCATCCTTTCATTTGTGGACAAGGACCTGCTGGAGCCAGGCTGCTCAGTCCTCCTCAACCACAAGGTGCAT
GCTGTGATCGGGGTGCTGATGGATGATACAGATCCTCTGGTCACAGTGATGAAGGTGGAAAAGGCCCCCCAGGAAACCTA
TGCTGACATTGGTGGGTTGGACAACCAAATCCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCATCCTGAATACT
ATGAAGAAATGGGTATAAAGCCCCCTAAGGGGGTCATTCTCTATGGTCCGCCTGGCACAGGTAAAACCTTGTTAGCCAAA
GCAGTAGCAAACCAAACTTCGGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAAAAATACCTGGGCGATGGGCC
CAAACTTGTACGGGAATTATTTCGAGTTGCTGAAGAACATGCACCATCCATTGTGTTCATTGATGAAATCGATGCCATTG
GGACCAAAAGATACGATTCAAACTCTGGAGGTGAGAGAGAAATTCAGCGAACAATGTTGGAACTGCTGAACCAGTTGGAT
GGATTTGATTCACGGGGAGATGTGAAGGTTATCATGGCCACAAACCGAATAGAGACTTTGGATCCAGCACTGATCAGACC
AGGGCGCATCGACAGGAAGATCGAGTTCCCCTTGCCCGATGAAAAGACCAAGAAGCGCATCTTTCAGATCCACACAAGCA
GGATGACACTGGCCGATGATGTAACCTTGGACGACCTGATCATGGCCAAGGATGATCTCTCTGGTGCTGACATCAAGGCA
ATCTGTACAGAAGCTGGTCTCATGGCTTTGAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAGAAATCTAAAGA
AAATGTTCTTTATAAGAAACAGGAAGGGACCCCTGAGGGGCTGTATCTCTAG

Library Parental gene expression (RPM)
SRP017611_brain 56 .54 RPM
SRP017611_kidney 84 .69 RPM
SRP017611_liver 84 .88 RPM
SRP040447_lung 68 .32 RPM
SRP040447_skeletal_muscle 77 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017510 possible_ortholog 2 retrogenes
retro_cfam_1238, retro_cfam_1562,
Choloepus hoffmanni ENSCHOG00000013595 ortholog_one2one 1 retrogene
retro_chof_1954,
Dasypus novemcinctus ENSDNOG00000006458 ortholog_one2one 1 retrogene
retro_dnov_2162,
Felis catus ENSFCAG00000011310 possible_ortholog 8 retrogenes
retro_fcat_1444, retro_fcat_1559, retro_fcat_2015, retro_fcat_344, retro_fcat_614, retro_fcat_691, retro_fcat_713, retro_fcat_924,
Macropus eugenii ENSMEUG00000001526 ortholog_one2one 1 retrogene
retro_meug_623,
Macaca mulatta ENSMMUG00000022990 possible_ortholog 1 retrogene
retro_mmul_255,
Oryctolagus cuniculus ENSOCUG00000006231 possible_ortholog 4 retrogenes
retro_ocun_1135, retro_ocun_1212, retro_ocun_1654, retro_ocun_411,
Otolemur garnettii ENSOGAG00000032343 possible_ortholog 2 retrogenes
retro_ogar_3014, retro_ogar_367,
Pongo abelii ENSPPYG00000025948 possible_ortholog 9 retrogenes
retro_pabe_1059, retro_pabe_153, retro_pabe_2379, retro_pabe_2408, retro_pabe_2737, retro_pabe_2832, retro_pabe_3099, retro_pabe_825, retro_pabe_907,
Ictidomys tridecemlineatus ENSSTOG00000001655 ortholog_one2one 1 retrogene
retro_itri_780,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_144 89.38 61.17
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Download FASTA sequences of all ENSCPOG00000002424 retrocopies