Parental gene:

RAB18, ENSCPOG00000002234

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_39:13261006..13298278(-)


>ENSCPOG00000002234
ATGGACGAGGACGTGCTGACCACTCTGAAGATCCTTATCATCGGCGAGAGTGGGGTGGGCAAGTCCAGCCTGCTCTTGAG
GTTCACAGATGACACTTTTGATCCAGAACTTGCAGCCACGATAGGTGTTGACTTCAAAGTGAAAACAATTTCAGTGGATG
GAAATAAGGCTAAACTTGCAATATGGTGGGATACTGCTGGTCAAGAGAGGTTTCGAACATTAACTCCCAGCTACTATAGA
GGTGCACAGGGTGTTATATTAGTTTATGATGTCACAAGAAGAGACACCTTTGTTAAGCTGGATAATTGGTTGAATGAGTT
GGAAACATACTGTACAAGAAATGACATAGTAAACATGCTAGTTGGAAATAAAATCGATAAGGAAAATCGTGAAGTTGATA
GAAATGAAGGCCTGAAATTTGCACGAAAACATTCCATGTTATTTATAGAGGCAAGTGCAAAAACCTGTGATGGTGTACAA
TGTGCCTTTGAGGAACTTGTTGAAAAGATCATTCAGACCCCTGGACTGTGGGAGAGTGAGAACCAGAATAAAGGAGTCAA
ACTGTCACACATGGAAGAGAGCCACGGAGGAGGGGCCTGTGGTGGTTACTGTTCTGTGTTATAA

Library Parental gene expression (RPM)
SRP017611_brain 43 .94 RPM
SRP017611_kidney 44 .39 RPM
SRP017611_liver 39 .00 RPM
SRP040447_lung 47 .77 RPM
SRP040447_skeletal_muscle 25 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009871 ortholog_one2one 1 retrogene
retro_btau_1691,
Choloepus hoffmanni ENSCHOG00000005565 ortholog_one2one 4 retrogenes
retro_chof_2391, retro_chof_256, retro_chof_396, retro_chof_846,
Dipodomys ordii ENSDORG00000014338 ortholog_one2one 1 retrogene
retro_dord_419,
Monodelphis domestica ENSMODG00000008253 ortholog_one2many 1 retrogene
retro_mdom_146,
Oryctolagus cuniculus ENSOCUG00000022307 ortholog_one2one 2 retrogenes
retro_ocun_1699, retro_ocun_841,
Otolemur garnettii ENSOGAG00000028015 ortholog_one2one 2 retrogenes
retro_ogar_2587, retro_ogar_2973,
Rattus norvegicus ENSRNOG00000018972 ortholog_one2one 2 retrogenes
retro_rnor_2744, retro_rnor_2962,
Sarcophilus harrisii ENSSHAG00000007613 ortholog_one2one 1 retrogene
retro_shar_281,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_633 75.90 79.71
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2. retro_cpor_652 79.03 58.94
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Download FASTA sequences of all ENSCPOG00000002234 retrocopies