Parental gene:

GTF2F2, ENSCJAG00000019220

Aliases:None
Description:general transcription factor IIF, polypeptide 2, 30kDa [Source:HGNC Symbol;Acc:4653]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:158469047..158636983(+)


>ENSCJAG00000019220
ATGGCCGAGCGCGGGGAACTCGATCTGACCGGCGCCAAACAGAACACGGGAGTGTGGCTTGTCAAGGTTCCTAAATATTT
GTCACAGCAATGGGCTAAAGCCCCTGGAAGAGGTGAAGTTGGGAAACTGCGGATTGCCAAGAATCAAGGAAGGACTGAGG
TGTCATTTACTTTGAATGAGGACCTTGCAAATATTCACGATATTGGCGGAAAACCGGCTTCAGTCAGTGCTCCTAGAGAA
CATCCATTTGTCTTGCAAAGTGTCGGAGGACAAACATTAACAGTATTTACTGAGAGCTCGTCAGATAAGCTGTCATTGGA
AGGAATAGTGGTACAGAGAGCTGAATGCCGACCAGCTGCCAGTGAAAACTACATGCGACTGAAAAGATTGCAAATAGAAG
AGTCTTCCAAACCTGTGAGGCTGTCACAGCAACTGGACAAGGTTGTGACAACCAATTACAAACCTGTTGCTAATCATCAA
TACAATATTGAGTATGAAAGGAAAAAGAAAGAAGACGGAAAGCGAGCTCGAGCTGATAAACAACACGTTTTAGACATGCT
GTTTTCAGCCTTTGAGAAACACCAGTACTATAATCTTAAGGACTTGGTGGACATCACAAAACAACCTGTGGTGTACCTGA
AGGAAATCTTAAAAGAAATTGGAGTTCAGAATGTAAAAGGGATCCACAAAAACACGTGGGAGCTGAAGCCAGAGTACAGA
CACTATCAAGGAGAAGAAAAGAGTGACTGA

Library Parental gene expression (RPM)
SRP051959_colon 10 .45 RPM
SRP051959_heart 7 .21 RPM
SRP051959_kidney 7 .92 RPM
SRP051959_liver 8 .92 RPM
SRP051959_lung 9 .21 RPM
SRP051959_lymph_node 13 .99 RPM
SRP051959_skeletal_muscle 13 .95 RPM
SRP051959_spleen 12 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000028333 ortholog_one2one 1 retrogene
retro_acar_174,
Choloepus hoffmanni ENSCHOG00000007391 ortholog_one2one 1 retrogene
retro_chof_1718,
Homo sapiens ENSG00000188342 ortholog_one2one 2 retrogenes
retro_hsap_2990, retro_hsap_368,
Gorilla gorilla ENSGGOG00000006657 ortholog_one2one 2 retrogenes
retro_ggor_2070, retro_ggor_379,
Myotis lucifugus ENSMLUG00000010505 possible_ortholog 1 retrogene
retro_mluc_58,
Macaca mulatta ENSMMUG00000012634 ortholog_one2one 2 retrogenes
retro_mmul_1913, retro_mmul_483,
Monodelphis domestica ENSMODG00000025484 ortholog_one2many 1 retrogene
retro_mdom_231,
Nomascus leucogenys ENSNLEG00000002097 possible_ortholog 1 retrogene
retro_nleu_2440,
Nomascus leucogenys ENSNLEG00000002106 possible_ortholog 1 retrogene
retro_nleu_742,
Otolemur garnettii ENSOGAG00000012517 ortholog_one2one 1 retrogene
retro_ogar_2772,
Procavia capensis ENSPCAG00000005868 ortholog_one2one 3 retrogenes
retro_pcap_102, retro_pcap_173, retro_pcap_375,
Pongo abelii ENSPPYG00000005333 ortholog_one2many 1 retrogene
retro_pabe_93,
Pan troglodytes ENSPTRG00000005840 ortholog_one2one 3 retrogenes
retro_ptro_2022, retro_ptro_288, retro_ptro_2932,
Rattus norvegicus ENSRNOG00000029316 ortholog_one2one 1 retrogene
retro_rnor_1288,
Ictidomys tridecemlineatus ENSSTOG00000006891 ortholog_one2many 1 retrogene
retro_itri_19,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1351 87.95 65.86
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2. retro_cjac_2990 58.14 84.74
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Download FASTA sequences of all ENSCJAG00000019220 retrocopies