Parental gene:

ENSCJAG00000019154

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:55939067..55951110(-)


>ENSCJAG00000019154
ATGGATTGGGTTATGAAACATAATGGTCCAAATGACGCTAGTGATGGGACAGTACGACTTCGTGGACTACCATTTGGTTG
CAGCAAAGAGGAAATAGTTCAGTTCTTTCAAGGGTTGGAAATCGTGCCAAATGGGATAACATTGACGATGGACTACCAGG
GGAGAAGCACAGGGGAGGCCTTCGTGCAGTTTGCTTCAAAGGAGATAGCAGAAAATGCTCTGGGGAAACACAAGGAAAGA
ATAGGGCACAGGTATATTGAGATCTTCAGAAGTAGCAGGAGTGAAATCAAAGGATTTTATGATCCACCAAGAAGATTGCT
GGGACAGCGACCGGGACCATATGATAGACCAATAGGAGGAAGAGGGGGTTATTATGGAGCTGGGCGTGGAAGTATGTATG
ACAGAATGCGACGAGGAGGTGATGGATATGATGGTGGTTATGGAGGTTTTGATGACTATGGTGGCTATAATAATTACGGC
TATGGGAATGATGGCTTTGATGACAGAATGAGAGATGGAAGAGGTATGGGAGGACATGGCTATGGCGGAGCCGGTGATGC
AAGTTCAGGTTTTCATGGTGGTCATTTCGTACATATGAGAGGGTTGCCTTTTCGTGCAACTGAAAATGACATTGCTAATT
TCTTCTCACCATTAAATCCAATACGAGTTCATATTGATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTAGAG
TTTGTGACACATGAAGATGCAGTGGCTGCCATGTCTAAAGATAAGAATAACATGCAGCATCGATACATTGAACTCTTCTT
GAATTCTACTCCTGGAGGTGGCTCTGGCATGGGAGGTTCTGGAATGGGAGGCTATGGAAGAGATGGAATGGATAATCAGG
GAGGTTATGGATCAGTTGGAAGAATGGGAATGGGGAACAATTACAGTGGAGGATATGGTACTCCTGATGGCTTGGGTGGT
TATGGCCGTGGTGGTGGAGGCAGTGGAGGTTACTATGGACAAGGTGGCATGAGTGGAGGTGGATGGCGTGGGATGTACTG
A

Library Parental gene expression (RPM)
SRP051959_colon 19 .46 RPM
SRP051959_heart 28 .63 RPM
SRP051959_kidney 24 .69 RPM
SRP051959_liver 15 .92 RPM
SRP051959_lung 34 .32 RPM
SRP051959_lymph_node 38 .93 RPM
SRP051959_skeletal_muscle 13 .61 RPM
SRP051959_spleen 32 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000010365 ortholog_one2many 1 retrogene
retro_acar_184,
Ailuropoda melanoleuca ENSAMEG00000018064 ortholog_one2many 1 retrogene
retro_amel_1375,
Bos taurus ENSBTAG00000014316 ortholog_one2many 2 retrogenes
retro_btau_1504, retro_btau_470,
Callithrix jacchus ENSCJAG00000009931 within_species_paralog 1 retrogene
retro_cjac_127,
Equus caballus ENSECAG00000007190 ortholog_one2many 1 retrogene
retro_ecab_912,
Gallus gallus ENSGALG00000003947 ortholog_one2many 1 retrogene
retro_ggal_16,
Macropus eugenii ENSMEUG00000013139 ortholog_one2many 1 retrogene
retro_meug_1627,
Mustela putorius furo ENSMPUG00000011997 ortholog_one2many 1 retrogene
retro_mputfur_1469,
Oryctolagus cuniculus ENSOCUG00000004443 ortholog_one2many 3 retrogenes
retro_ocun_1136, retro_ocun_1379, retro_ocun_1615,
Ictidomys tridecemlineatus ENSSTOG00000011676 possible_ortholog 1 retrogene
retro_itri_647,
Tursiops truncatus ENSTTRG00000013322 ortholog_one2many 2 retrogenes
retro_ttru_1744, retro_ttru_1766,
Vicugna pacos ENSVPAG00000011814 ortholog_one2many 1 retrogene
retro_vpac_403,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_292 97.03 93.95
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2. retro_cjac_578 93.82 51.45
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Download FASTA sequences of all ENSCJAG00000019154 retrocopies