Parental gene:

SLC35C2, ENSCJAG00000017091

Aliases:None
Description:solute carrier family 35 (GDP-fucose transporter), member C2 [Source:HGNC Symbol;Acc:17117]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:40424575..40433703(-)


>ENSCJAG00000017091
ATGGGAAGGCTCAGCACCAGCCACCAGCCCCTTAGAGGGGTGCCTGCCCCCGCTGACTCAGGAGCTCGGGTGCTGCAGCC
GCCACGAATGGGGAGGTGGGCTCTCGATGTGGCCTTTGTGTGGAAGGCGGTGTTGACCCTGGGGCTGGTGCTTCTCTACT
ATTGCTTCTCCATCGGTATCACCTTCTACAACAAATGGCTGACAAAGAGCTTCCATTTCCCCCTCTTCATGACGATGCTG
CACCTGGCCGTGATCTTCCTCTTTTCCGCCCTGTCCAGGGCGCTGGTTCAGTGTTCCAGCCACAGGGCCCGCGTGGTGCT
GAGCTGGGCGGACTACCTCAGAAGAGTGGCTCCCACAGCTCTAGCGACGGCACTTGATGTGGGCTTGTCCAACTGGAGCT
TCCTCTATGTCACTGTCTCGCTGTACACAATGACCAAATCCTCAGCTGTCCTCTTCATCTTGATCTTCTCTCTGATCTTC
AAGCTGGAGGAGCTGCGCGCTGCACTGGTCCTGGTGGTCCTCCTCATCGCCGGGGGTCTCTTCATGTTCACCTACAAGTC
CACACAGTTCAACGTGGAGGGCTTTGCTTTGGTGCTGGGGGCCTCATTCATCGGTGGCATTCGCTGGACCCTCACCCAGA
TGCTGCTGCAGAAGGCTGAACTCGGCCTCCAGAATCCCATTGACACCATGTTCCACCTGCAGCCACTCATGTTCCTGGGG
CTCTTCCCTCTCTTTGCTGTATTTGAAGGTCTCCATTTGTCCACATCTGAGAAAATCTTCCGTTTCCAGGACACAGGACT
GCTCCTGCGGGTACTTGGGAGCCTCTTCCTTGGCGGGATTCTCGCCTTTGGTTTGGGCTTCTCTGAGTTCCTCCTGGTCT
CCAGAACCTCCAGCCTCACTCTCTCCATTGCTGGCATTTTTAAGGAAGTCTGCACTTTGCTGTTGGCAGCTCATCTGCTG
GGCGATCAGATCAGCCTCCTGAACTGGCTGGGTTTTGCCCTCTGCCTCTCGGGAATATCCCTCCATGTTGCCCTCAAAGC
TCTGCATTCCAGAGGTGATGGTGGCCCCAAGCCCTTGAAGGGGATGGGCTCCAGCCCCGACCTGGAGCTGCTGCTCCGGA
GCAGCCAGCAAGAGGAAGGTGACAATGAGGAGGAGTACTTTGTGGCCCAGGGGCAGCAGTGA

Library Parental gene expression (RPM)
SRP051959_colon 10 .67 RPM
SRP051959_heart 7 .44 RPM
SRP051959_kidney 12 .31 RPM
SRP051959_liver 5 .65 RPM
SRP051959_lung 10 .77 RPM
SRP051959_lymph_node 12 .17 RPM
SRP051959_skeletal_muscle 5 .94 RPM
SRP051959_spleen 10 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011583 ortholog_one2one 2 retrogenes
retro_chof_2686, retro_chof_952,
Homo sapiens ENSG00000080189 ortholog_one2one 1 retrogene
retro_hsap_4789,
Gorilla gorilla ENSGGOG00000014052 ortholog_one2one 1 retrogene
retro_ggor_2982,
Nomascus leucogenys ENSNLEG00000006880 ortholog_one2one 1 retrogene
retro_nleu_1104,
Pongo abelii ENSPPYG00000011091 ortholog_one2one 1 retrogene
retro_pabe_3726,
Pan troglodytes ENSPTRG00000013582 ortholog_one2one 1 retrogene
retro_ptro_3186,
Tupaia belangeri ENSTBEG00000005486 ortholog_one2one 1 retrogene
retro_tbel_531,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4140 76.73 50.38
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Download FASTA sequences of all ENSCJAG00000017091 retrocopies