Parental gene:

COIL, ENSCJAG00000013960

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:100458406..100480104(+)


>ENSCJAG00000013960
ATGGCAGCCTCCGAGACGGTTAGGCTACGGCTTCAATTTGATTACCCACCGCCAGCTACCCCGCACTGTACAGCCTTCTG
GCTTCTGGTCGACTTGAACAGATGCCGAGTCGTCACAGATCTCATTAGTCTCATCCGCCAGCGCTTCGGCTTCAGTTCTG
GTGCCCTCCTAGGCCTCTACCTGGAGGGGGGGCTCCTGCCCCCTGCCGAGAGCGCGCGCCTCGTGAGAGACAACGACTGC
CTCAGAGTTAAATTAGAAGACAGAGGAGTTGCTGAGAATTCTGTAGTCATCAGTAATGGTGATGGTACTAATTTATCACT
TAGAAAAGCAAAGAAGCGGGCATTTAAGTTAGAGGAGGATGAAGAAACTGAACCAGATTACAGATATTCAAAGAAGCGTT
GGAAGAGGCAAGAGAACAGGAACAATGAGAAGGTCTTGGATCTGGAACCAAAAGCTGTCACAGATAAGACTGTCAGCCAA
AAAAAAAGGAGGAAAAATAAAGTAACCGGCGGCACAGTGGGTGATGATAACAAAGAGACCAAAAGAAAACCACCAAAGAA
AAAGGAGAAATGTGAATATAAAAAAAAGGCCAAGAATCCCAAGTCTCCTCAAGTACAGGCAGTAAAAGACTGGGCCAATC
AGAGATGTAGTTCTCCAAAAGGTTCTGCTAGAAACAGCCTTGTTAAAGCCAAAAGGAAAGGTGGTGTAAACGTACGCTCA
AAAGAGAGTCCCAGTTTCTCCTCAGAGTCTGAGTCTTGTCATGAATCAATCAGTGATGGTCCCAGCAAAGTCACTTTGGA
GGCCAGAAATTCCTCAGAGAAATTACCAACTGAGTTATCAAAGGAAGGACCCTCTACTGGAAATAGAACTGCAGACAAAC
TTGCTACAAAACCTGGCTTTAGCCTTACCCCCAGCAAGGGCAAGAAGACCTCCGGAACATCATCTTCTAGTTCAGACTCT
AGTTCAGAGTCAGATGACCAGTGTTCATTGAGCACCCCGGAGTGTGCTGCGGGTTTCTTAAAGACAGTAGGCGTTTTTGC
AGAAAGAGGTTGTCTAGGCCCAGGGCTGTTATCACAGACTGCAGGTGCTGCTGGATGGAAGCGTTCTGGCTCAGATGGTG
GTGGACAGGCTCCTGGTCCTTCTCCCAGCATGTCTCTCCCCACTAGTTTAGGAAGAGGATGGGGTAGAGGAGAGAACCTT
TTTTCGTGGAAGGGAGCTAGAGGAAGGGGCATGCGGGGGAGAGGTCGAGGACGGGGGCATCCTGTTTCCTGTGTTATGAA
TAGAAGCACTGACAACCAGAGGCAACAGCAATTAAATGAAGTGGTAACAAATTCATCTACTATTATCCAGAATCCAGTGG
ACACACACAAGGACTATAGTCTGTTACCACTGTTAGCAGCTGCCCCTCAAGTTGGAGAAAAGATTGCATTTAAGCTTTTG
GAACTAACATCCAGTTACTCTCCTGATGTCTCTGACTACAAGGAAGGAAAAATATTAAGCCACAATCCAGAGACCCAGCA
AGTAGATATAGAAATTCTTTCATCCTTACCTGCCTTGAGAGAACCTGGGAAATTTGATTTGGTTTATCACAATGAAAATG
GAACCGAGGTAGTGGAGTATGCTGTGACACAGGAGAGCAAGATCACTGTATTTTGGAGAGAGTTGATTGATCCAAGACTG
ATTATTGAATCTCCGAGTAACACATCAAATACAGAACCTGTCTGA

Library Parental gene expression (RPM)
SRP051959_colon 5 .04 RPM
SRP051959_heart 5 .56 RPM
SRP051959_kidney 6 .30 RPM
SRP051959_liver 4 .48 RPM
SRP051959_lung 7 .55 RPM
SRP051959_lymph_node 9 .29 RPM
SRP051959_skeletal_muscle 4 .96 RPM
SRP051959_spleen 7 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000008740 ortholog_one2one 1 retrogene
retro_chof_1121,
Dasypus novemcinctus ENSDNOG00000023961 ortholog_one2many 1 retrogene
retro_dnov_1986,
Echinops telfairi ENSETEG00000003687 ortholog_one2one 1 retrogene
retro_etel_1537,
Nomascus leucogenys ENSNLEG00000008026 ortholog_one2one 1 retrogene
retro_nleu_1014,
Oryctolagus cuniculus ENSOCUG00000011345 ortholog_one2one 1 retrogene
retro_ocun_1798,
Pongo abelii ENSPPYG00000008248 ortholog_one2one 1 retrogene
retro_pabe_305,
Tupaia belangeri ENSTBEG00000008882 ortholog_one2one 4 retrogenes
retro_tbel_2118, retro_tbel_3549, retro_tbel_3961, retro_tbel_838,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2240 81.12 64.29
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Download FASTA sequences of all ENSCJAG00000013960 retrocopies