Parental gene:

PPP2CA, ENSCJAG00000013634

Aliases:None
Description:protein phosphatase 2, catalytic subunit, alpha isozyme [Source:HGNC Symbol;Acc:9299]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:71082993..71116685(+)


>ENSCJAG00000013634
ATGGACGAGAAGGTGTTCACCAAGGAGCTGGACCAGTGGATCGAGCAGCTGAACGAGTGCAAGCAGCTGTCCGAGTCCCA
GGTCAAGAGCCTCTGCGAGAAGGCTAAAGAAATCCTGACGAAAGAATCCAATGTGCAAGAGGTTCGATGTCCAGTCACTG
TCTGTGGAGATGTGCATGGGCAATTTCATGATCTCATGGAACTGTTTAGAATTGGTGGCAAATCACCAGATACAAATTAC
TTGTTTATGGGAGATTATGTTGACAGAGGATATTATTCAGTTGAAACAGTTACACTGCTTGTAGCTCTTAAGGTTCGTTA
CCGTGAACGCATCACCATTCTTCGAGGGAATCATGAGAGCAGACAGATCACACAAGTTTATGGTTTCTATGATGAATGTT
TAAGAAAATACGGAAATGCAAATGTTTGGAAATATTTTACAGATCTTTTTGACTATCTTCCTCTCACTGCCTTGGTGGAT
GGGCAGATATTCTGTCTACATGGTGGTCTCTCGCCATCTATAGATACACTGGATCATATCAGAGCACTTGATCGCCTACA
AGAAGTTCCACATGAGGGTCCAATGTGTGACTTGCTGTGGTCAGATCCAGATGACCGTGGTGGTTGGGGTATATCTCCTC
GGGGAGCTGGTTACACCTTTGGACAAGATATATCTGAGACATTTAATCATGCCAATGGCCTCACGTTGGTGTCTAGAGCT
CACCAGCTAGTGATGGAGGGATATAACTGGTGCCATGACCGGAATGTAGTAACGATTTTCAGTGCTCCAAACTATTGTTA
TCGTTGTGGTAACCAAGCTGCAATCATGGAACTTGATGATACTCTAAAATACTCTTTCTTGCAGTTTGACCCAGCACCTC
GTAGAGGCGAGCCACATGTTACTCGTCGTACCCCAGACTACTTCCTGTAA

Library Parental gene expression (RPM)
SRP051959_colon 47 .90 RPM
SRP051959_heart 54 .08 RPM
SRP051959_kidney 40 .98 RPM
SRP051959_liver 30 .37 RPM
SRP051959_lung 40 .75 RPM
SRP051959_lymph_node 43 .29 RPM
SRP051959_skeletal_muscle 60 .86 RPM
SRP051959_spleen 43 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002653 ortholog_one2one 1 retrogene
retro_acar_69,
Callithrix jacchus ENSCJAG00000012460 within_species_paralog 1 retrogene
retro_cjac_985,
Homo sapiens ENSG00000113575 ortholog_one2one 1 retrogene
retro_hsap_369,
Nomascus leucogenys ENSNLEG00000026729 ortholog_one2one 1 retrogene
retro_nleu_2441,
Otolemur garnettii ENSOGAG00000009695 ortholog_one2one 2 retrogenes
retro_ogar_3414, retro_ogar_921,
Rattus norvegicus ENSRNOG00000005389 ortholog_one2one 5 retrogenes
retro_rnor_1263, retro_rnor_1264, retro_rnor_1265, retro_rnor_1266, retro_rnor_817,
Sarcophilus harrisii ENSSHAG00000016632 ortholog_one2one 3 retrogenes
retro_shar_313, retro_shar_428, retro_shar_471,
Ictidomys tridecemlineatus ENSSTOG00000010560 ortholog_one2one 1 retrogene
retro_itri_258,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1346 94.92 82.52
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2. retro_cjac_4113 82.89 95.79
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Download FASTA sequences of all ENSCJAG00000013634 retrocopies