Parental gene:

PSMD12, ENSCJAG00000008691

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:120649850..120673626(-)


>ENSCJAG00000008691
ATGGCGGACGGCGGGTCGGAGCGGGCTGACGGACGCATCGTCAAGATGGAGGTGGACTACAGCGCCACGGTGGATCAGCG
CCTACCCGAGTGTGCAAAGCTAGCCAAGGAAGGAAGACTTCAAGAAGTCATTGAAACCCTTCTTTCTTTGGAAAAGCAGA
CTCGTACTGCTTCCGATATGGTATCTACATCCCGTATCTTAGTTGCAGTAGTGAAGATGTGCTATGAGGCTAAAGAATGG
GATTTACTTAATGAAAATATTATGCTTTTATCCAAAAGACGGAGTCAGTTAAAACAAGCTGTTGCTAAAATGGTTCAACA
GTGCTGTACTTACGTTGAGGAAATCACAGACCTTCCTATCAAACTTCGATTAATTGATACTCTACGAATGGTTACCGAAG
GCAAGATTTATGTTGAAATTGAGCGTGCTCGACTGACTAAAACATTAGCAACTATAAAAGAACAAAACGGTGATGTGAAA
GAGGCAGCCTCCATCTTGCAGGAGCTACAGGTGGAAACCTACGGGTCAATGGAAAAGAAAGAGCGAGTGGAATTTATTTT
GGAGCAGATGAGGCTCTGCCTAGCTGTGAAGGATTACATTCGAACACAAATCATCAGCAAGAAAATTAACACCAAATTTT
TCCAGGAAGAAAATACAGAGAAATTAAAGTTGAAGTACTATAATTTAATGATTCAGCTGGATCAACATGAGGGATCCTAT
TTGTCTATTTGTAAGCACTACAGAGCAATATATGATACTCCCTGTATACAGGCAGAAAGTGAAAAATGGCAGCAGGCTCT
GAAGAGTGTTGTACTCTATGTTATCCTGGCTCCTTTTGACAACGAACAGTCCGATTTGGTTCACCGAATAAGTGGTGACA
AGAAGTTAGAAGAAATTCCCAAATACAAGGATCTTTTAAAGCTTTTTACCACAATGGAGTTGATGCGTTGGTCCACACTT
GTTGAGGACTATGGAATGGAATTAAGGAAAGGTTCCCCTGAGAGTCCTGCAACTGATGTTTTTGGTTCTACAGAGGAAGG
CGAAAAAAGGTGGAAAGACTTGAAGAACAGAGTTGTTGAACATAATATTAGAATAATGGCTAAGTATTATACTCGGATAA
CAATGAAAAGAATGGCACAGCTTCTGGATCTATCTGTTGATGAGTCTGAAGCCTTTCTCTCAAATCTAGTAGTTAACAAG
ACCATCTTTGCTAAAGTAGACAGATTAGCAGGAATTATCAACTTCCAGAGACCCAAGGATCCAAATAATTTATTAAATGA
CTGGTCTCAGAAACTGAACTCATTAATGTCTCTGGTTAACAAAACTACACATCTCATAGCCAAAGAGGAGATGATACATA
ATCTACAATAA

Library Parental gene expression (RPM)
SRP051959_colon 11 .09 RPM
SRP051959_heart 15 .03 RPM
SRP051959_kidney 12 .02 RPM
SRP051959_liver 10 .38 RPM
SRP051959_lung 14 .58 RPM
SRP051959_lymph_node 10 .34 RPM
SRP051959_skeletal_muscle 25 .42 RPM
SRP051959_spleen 10 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000197170 ortholog_one2one 1 retrogene
retro_hsap_2801,
Gorilla gorilla ENSGGOG00000014761 ortholog_one2one 1 retrogene
retro_ggor_1947,
Loxodonta africana ENSLAFG00000010876 ortholog_one2one 1 retrogene
retro_lafr_467,
Nomascus leucogenys ENSNLEG00000001265 ortholog_one2one 1 retrogene
retro_nleu_1541,
Pongo abelii ENSPPYG00000008565 ortholog_one2one 1 retrogene
retro_pabe_2223,
Pan troglodytes ENSPTRG00000022722 ortholog_one2one 1 retrogene
retro_ptro_1898,
Tupaia belangeri ENSTBEG00000014760 ortholog_one2one 1 retrogene
retro_tbel_443,
Tarsius syrichta ENSTSYG00000013154 ortholog_one2one 1 retrogene
retro_tsyr_1670,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1400 79.00 60.75
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2. retro_cjac_2793 97.81 100.00
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Download FASTA sequences of all ENSCJAG00000008691 retrocopies