Parental gene:

TERF1, ENSCJAG00000007714

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:16:25280644..25320856(+)


>ENSCJAG00000007714
ATGGCGGAGGACGCCTCCTCAGCGGCTCCGAGCCCACGGGGCTGTGCGGATGGTAGGGATGCCGACGCTACCGAGGAGCG
GATAGCAGAAACGGAGAGGAACGACGAGGAGCAGTTCGAGTGCCAGGAACTGCTCGAGTGCCAGATGCAGTTGGGGGCTT
CCGAGGAGGAGGAGGAGGATGCGGGCTTTGTGGCCGAGGCCGAGGCTGTGGCTGCCGGCTGGATGCTCGATTTCCTCTGC
CTCTCTCTTTGCCGAGCTTTCCGCGACGGCCGCTCCGAGGACTTTCGCCAGACCCGCGACAGCGCGGAGGCTATTATTCA
TGGACTATCCAGTCTAACAGCTTATCAGTTGAGAACTGTATACATATGTCAGTTTTTGACAAGAATTGCAGCAGGAAAAA
ACCTTGATGCACAGTTTGAAAATGATGAACGAATTACACCCTTAGAATCAGCCCTGATGATTTGGGGTTCAATTGAAAAG
GAACATGACAAACTTCACGAAGAAATACAGAATTTAATTGAAGTTCAGGCTATAGCTGTTTGTATGGAAAATGGCAACTT
TAAGGAAGCAGAAGAAGTCTTTGAAAGAATATTTGGTGATCCAAATTCTTGCGCGCCTTTAAAAAGGAAATTGCTTATGA
TAATCTCTCAGAAAGATACATACCATTCTGTATTTCAACACTTCAGTTACAACCACATGATGGAGAAAGTTAAGAGTTAT
GTGAATGATGTGCTAAGTGAAAAATCATCAACCTTTCTAATGAAGGCAGCAGCAAAAGTAGTAGAAAGTAAAAGAGCAAG
AACAACAACTTCTCAAGATAAACCTAATGGTAATGATGTTGAAATGGAAACTGAAGCTAACTTGGATACAAGAAAAAGTG
TTAGTGACAAACAGTCTGCGGTAACTGAATCCTCAGAGGGTACAGTATCCTTATTGAGGTCTCACAAGAATCTTTTCCTA
TCTAAATTGAAACATGGAACCCAGCAACGAGAACTTAATAAAGAAAGAAGAGTAGGAACTCTTCAAAGTGCAAAAAGGAA
AAAAGAAAGCAGAAGAGCCACCAAAAGTAGAATACCTGTTTCGGAGAGTCAACCGGTGACTCCTGAAAAACAACGAGCTA
GAAAAAGACAGGCATGGCTTTGGGAAGAAGACAAGAATTTGAGATCTGGCGTTAGGAAATTTGGAGAGGGAAACTGGTCT
AAAATACTGTTGCATTATAAATTCAACAACCGGACAAGTGTCATGTTAAAAGATAGATGGAGGACCATGAAGAAACTAAA
ACTCATTTGCTCAGACAGTGAAGACTGA

Library Parental gene expression (RPM)
SRP051959_colon 4 .50 RPM
SRP051959_heart 6 .03 RPM
SRP051959_kidney 6 .15 RPM
SRP051959_liver 3 .51 RPM
SRP051959_lung 6 .30 RPM
SRP051959_lymph_node 7 .26 RPM
SRP051959_skeletal_muscle 2 .73 RPM
SRP051959_spleen 5 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002407 ortholog_one2one 1 retrogene
retro_chof_944,
Homo sapiens ENSG00000147601 ortholog_one2one 6 retrogenes
retro_hsap_1166, retro_hsap_1917, retro_hsap_2493, retro_hsap_3099, retro_hsap_4324, retro_hsap_4861,
Oryctolagus cuniculus ENSOCUG00000002793 ortholog_one2many 1 retrogene
retro_ocun_546,
Pan troglodytes ENSPTRG00000022919 ortholog_one2one 7 retrogenes
retro_ptro_1245, retro_ptro_1445, retro_ptro_2095, retro_ptro_3236, retro_ptro_3241, retro_ptro_611, retro_ptro_802,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1658 79.51 58.07
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Download FASTA sequences of all ENSCJAG00000007714 retrocopies