Parental gene:

TSPAN17, ENSCJAG00000007278

Aliases:None
Description:tetraspanin 17 [Source:HGNC Symbol;Acc:13594]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:62635950..62646267(-)


>ENSCJAG00000007278
GGTGTTCTGGGTGGGGGTGATGGGGTGTGGGATGATGCGAGCCAGCATGGAGGAAATGGAGTGGGATGGCTCTGGAGGGT
GGATTCCCCTCCTTTTCCTGCACTGAGAGGAGGGTTTTGTAGAACCTCTGGGGCAAGTGTGAGAGGCCTGGTGCAGACGT
GGTCAGCAGTCTCTGCCGCCACAGGGCTTGGCCTAGTGCCTGCCTCTCAGGTAGTTCGGAGGAAGCCACAGTCGTTGAAC
CATTATCCTTGTCCTACTCCCTCCCTTTTCGACTCTCTTGGGTTGGGGGGCAAGCTCAGGGTCCCCTCCCTTGTACCCCT
CTGCCTCCACCAACCTGGAGGTGGGGCCCAGGCCTGTGGGGGTGGGGAAATTGCCACCTACCTGGCTGTCCCAGTCCCTT
CCCAGACAGCCCTGTCTCCCTGCAGCCTGGGCTTATCCCCAGACAGGGTGAGGCTCTTGGGGTGGGCCTGGCTCACCTGG
GGCTCTCTCCTGCCCCCACAGTGGTCTTGCTGTGGAGCCCGAGGCCCCAACGACTGGAACCTCAATATCTACTTCAACTG
CACTGACTTGAACCCTAGCCGGGAACGCTGTGGGGTGCCCTTCTCCTGCTGCCTTAGGGACCCTGCGGAAGATGTCCTCA
ACACCCAGTGTGGCTACGACGTCCGGCTCAAACTGGAGCTGGAGCAGCAGGGCTTCATCCACACCAAAGGCTGCGTGGGC
CAGTTTGAGAAGTGGCTGCAGGACAACCTGATTGTCGTGGCGGGGGTCTTCGTGGGCATCGCCCTCCTCCAGATCTTTGG
CATCTGCCTGGCCCAGAACCTCGTGAGTGACATCAAGGCAGTGAAAGCCAACTGGAGCAAATGGAATGATGACTTTGAAA
ACCACTGGCTTACGCCCACCATTTCTGAGGTCCTGTCCATGATGGGGCCTCAGCAGAACTCTCTGGTTGGGGCCCCTGGC
CTGGCGCCACCCTGCCGACACATTTTCTTTGGCCTGGGTGGTTTATATCCTTGA

Library Parental gene expression (RPM)
SRP051959_colon 20 .08 RPM
SRP051959_heart 10 .28 RPM
SRP051959_kidney 10 .21 RPM
SRP051959_liver 7 .91 RPM
SRP051959_lung 10 .75 RPM
SRP051959_lymph_node 9 .15 RPM
SRP051959_skeletal_muscle 14 .87 RPM
SRP051959_spleen 6 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007218 ortholog_one2one 2 retrogenes
retro_amel_1365, retro_amel_979,
Canis familiaris ENSCAFG00000016638 ortholog_one2one 2 retrogenes
retro_cfam_1585, retro_cfam_704,
Callithrix jacchus ENSCJAG00000016486 within_species_paralog 1 retrogene
retro_cjac_4116,
Equus caballus ENSECAG00000022322 ortholog_one2one 1 retrogene
retro_ecab_554,
Felis catus ENSFCAG00000007803 ortholog_one2many 1 retrogene
retro_fcat_1133,
Mustela putorius furo ENSMPUG00000012505 ortholog_one2one 1 retrogene
retro_mputfur_428,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2289 69.29 51.85
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Download FASTA sequences of all ENSCJAG00000007278 retrocopies