Parental gene:

ENSCJAG00000005910

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:16:78076584..78185321(+)


>ENSCJAG00000005910
ATGGCGTCCCGCAAGGAAGGTACCGGCTCTTCTGCCACCTCTTCCAGTTCCACCGCCGGCGCAGCAGGGAAAGGCAAAGG
CAAAGGCGGCTCTGGAGATTCAGCCGTGAAGCAAGTGCAGATAGATGGCCTTGTGGTATTAAAGATAATCAAACATTATC
AAGAAGAAGGACAAGGAACTGAAGTTGTTCAAGGAGTGCTTTTGGGCCTGGTTGTAGAAGATCGGCTTGAAATTACCAAC
TGCTTTCCCTTCCCTCAGCACACAGAGGATGATGCTGACTTTGATGAAGTCCAATATCAGATGGAAATGATGCGGAGCCT
TCGCCATGTAAACATTGATCATCTTCATGTGGGCTGGTACCAGTCCACATACTATGGCTCATTTGTCACCCGAGCGCTCC
TGGACTCTCAGTTCAGTTACCAGCATGCCATTGAAGAATCTGTCGTTCTCATTTATGATCCCATAAAAACTGCCCAAGGG
TCTCTCTCACTAAAGGCATACAGACTGACTCCTAAACTGATGGAAGTTTGTAAAGAGAAGGATTTTTCCCCTGAAGCATT
GAAAAAAGCAAATATCACCTTTGAGTACATGTTTGAAGAAGTGCCGATTGTAATTAAAAATTCACATCTGATTAATGTCT
TAATGTGGGAACTTGAAAAGAAGTCAGCTGTAGCAGATAAACATGAATTGCTCAGCCTTGCCAGCAGCAATCATTTGGGG
AAGAATCTACAGTTGCTGATGGACAGAGTGGACGAAATGAGCCAGGATATAGTTAAATACAACACATACATGAGGAATAC
TAGTAAACAGCAGCAGCAGAAACATCAGTATCAGCAGCGTCGCCAGCAGGAGAATATGCAGCGCCAGAGCCGAGGAGAAC
CCCCGCTCCCTGAGGAGGACCTGTCCAAACTCTTCAAACCACCACAGCCTCCTGCCAGGATGGACTCACTGCTCATTGCA
GGCCAGATAAACACTTACTGCCAGAACATCAAGGAGTTCACTGCCCAAAACTTAGGCAAGCTCTTCATGGCCCAGGCTCT
TCAAGAATACAACAACTAA

Library Parental gene expression (RPM)
SRP051959_colon 36 .68 RPM
SRP051959_heart 45 .27 RPM
SRP051959_kidney 44 .04 RPM
SRP051959_liver 50 .25 RPM
SRP051959_lung 48 .69 RPM
SRP051959_lymph_node 66 .23 RPM
SRP051959_skeletal_muscle 71 .98 RPM
SRP051959_spleen 69 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000000816 ortholog_one2many 1 retrogene
retro_cfam_2073,
Echinops telfairi ENSETEG00000000324 ortholog_many2many 1 retrogene
retro_etel_24,
Macropus eugenii ENSMEUG00000015663 ortholog_many2many 4 retrogenes
retro_meug_1223, retro_meug_1244, retro_meug_1790, retro_meug_376,
Monodelphis domestica ENSMODG00000004154 ortholog_one2many 1 retrogene
retro_mdom_1243,
Mus musculus ENSMUSG00000022312 ortholog_one2many 1 retrogene
retro_mmus_1668,
Oryctolagus cuniculus ENSOCUG00000007534 ortholog_one2many 1 retrogene
retro_ocun_608,
Otolemur garnettii ENSOGAG00000008905 ortholog_one2many 1 retrogene
retro_ogar_2043,
Sorex araneus ENSSARG00000009067 ortholog_one2many 1 retrogene
retro_sara_69,
Sarcophilus harrisii ENSSHAG00000014977 ortholog_one2many 1 retrogene
retro_shar_561,
Ictidomys tridecemlineatus ENSSTOG00000001403 ortholog_one2many 1 retrogene
retro_itri_420,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3023 98.58 100.00
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Download FASTA sequences of all ENSCJAG00000005910 retrocopies