Parental gene:

UFC1, ENSCJAG00000005303

Aliases:None
Description:ubiquitin-fold modifier conjugating enzyme 1 [Source:HGNC Symbol;Acc:26941]
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:14682120..14687040(+)


>ENSCJAG00000005303
ATGGCGGATGAGGCCACGCGACGTGTTGTGTCTGAGATTCCGGTGCTGAAGACAAATGCCGGACCCCGAGATCGGGAGTT
ATGGGTGCAGCGACTGAAGGAGGAATATCAGTCCCTTATTCGGTATGTGGAGAACAACAAGAATGCTGACAACGATTGGT
TCCGACTGGAGTCCAACAAGGAAGGGACTCGGTGGTTTGGAAAATGCTGGTATATCCATGACCTCCTGAAATACGAGTTT
GACATCGAGTTTGACATTCCTATCACGTATCCTACTACTGCCCCAGAAATTGCAGTCCCTGAGCTTGATGGAAAGACAGC
AAAGATGTACAGGGGTGGAAAAATATGCCTGACGGATCACTTCAAACCTTTGTGGGCCAGGAACGTGCCCAAATTTGGAC
TAGCTCATCTCATGGCTCTGGGGCTGGGTCCGTGGCTGGCAGTGGAAATCCCTGATCTGATTCAGAAGGGTGTCATCCAA
CACAAAGAGAAATGCAACTAA

Library Parental gene expression (RPM)
SRP051959_colon 13 .91 RPM
SRP051959_heart 8 .72 RPM
SRP051959_kidney 20 .17 RPM
SRP051959_liver 17 .98 RPM
SRP051959_lung 14 .46 RPM
SRP051959_lymph_node 14 .50 RPM
SRP051959_skeletal_muscle 11 .40 RPM
SRP051959_spleen 18 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015545 ortholog_one2one 1 retrogene
retro_amel_1221,
Danio rerio ENSDARG00000022340 ortholog_one2one 1 retrogene
retro_drer_22,
Dasypus novemcinctus ENSDNOG00000013733 ortholog_one2one 1 retrogene
retro_dnov_1943,
Echinops telfairi ENSETEG00000015730 ortholog_one2one 4 retrogenes
retro_etel_1042, retro_etel_562, retro_etel_714, retro_etel_83,
Felis catus ENSFCAG00000009829 ortholog_one2one 1 retrogene
retro_fcat_1217,
Homo sapiens ENSG00000143222 ortholog_one2one 1 retrogene
retro_hsap_3753,
Gorilla gorilla ENSGGOG00000007486 ortholog_one2one 1 retrogene
retro_ggor_2525,
Loxodonta africana ENSLAFG00000026969 ortholog_one2one 1 retrogene
retro_lafr_473,
Macropus eugenii ENSMEUG00000004417 ortholog_one2one 1 retrogene
retro_meug_423,
Myotis lucifugus ENSMLUG00000004543 ortholog_one2one 1 retrogene
retro_mluc_716,
Macaca mulatta ENSMMUG00000022632 ortholog_one2one 2 retrogenes
retro_mmul_1727, retro_mmul_2273,
Mustela putorius furo ENSMPUG00000014243 ortholog_one2one 1 retrogene
retro_mputfur_854,
Nomascus leucogenys ENSNLEG00000014049 ortholog_one2one 1 retrogene
retro_nleu_1893,
Oryctolagus cuniculus ENSOCUG00000002389 ortholog_one2one 1 retrogene
retro_ocun_1304,
Otolemur garnettii ENSOGAG00000026679 ortholog_one2one 4 retrogenes
retro_ogar_1385, retro_ogar_2156, retro_ogar_3496, retro_ogar_496,
Ochotona princeps ENSOPRG00000010906 ortholog_one2one 3 retrogenes
retro_opri_319, retro_opri_509, retro_opri_773,
Pongo abelii ENSPPYG00000000610 ortholog_one2one 1 retrogene
retro_pabe_3164,
Pan troglodytes ENSPTRG00000001572 ortholog_one2one 1 retrogene
retro_ptro_2547,
Pteropus vampyrus ENSPVAG00000005519 ortholog_one2one 2 retrogenes
retro_pvam_1161, retro_pvam_814,
Sus scrofa ENSSSCG00000006363 ortholog_one2one 1 retrogene
retro_sscr_171,
Tupaia belangeri ENSTBEG00000016276 ortholog_one2one 1 retrogene
retro_tbel_2810,
Tarsius syrichta ENSTSYG00000010824 ortholog_one2one 1 retrogene
retro_tsyr_1751,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2546 99.09 66.27
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2. retro_cjac_3146 74.77 64.46
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3. retro_cjac_4122 92.17 100.00
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Download FASTA sequences of all ENSCJAG00000005303 retrocopies