RetrogeneDB - Parental gene ENSCJAG00000003155 details

                            
>ENSCJAG00000003155
CTGAGCCTGCGTGGTCCCTCCAAGGTGACTGCTCCGACAAAAGCCCCCAGCACCCCCACTCATCTGCCTCCTGCGCCCCC

TGTGGACCCCGCGCGGACGCGCGCCCCTCCCCCTGCGGTCGCGCGCCCGCCAACCGCGTGTGCGACGGGGTCCCCTCCCC

GCGACCGGCCTCCTTCAGACTCACCCACGTGTGCGGCGGCGGCGGTGGTGGCGTGGCCCGGCACCCGGGAGGTGGAGAGA

AAGGGCTGTCAGGCAACGAAGGTTTTGGGAACAGTAAAATGGTTCAATGTAAGGAACGGATATGGTTTCATCAACAGGAA

TGACACCAAGGAAGATGTATTTGTACACCAGACTGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAG

ATGGAGAGACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGTCCTGGTGGCGTT

CCAGTTCAAGGCAGTAAATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGTAGGGGTCCTCCACGCAATTA

CCAGCAAAATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAGGGATCAGAGAGTGCTCCCGAAGGCCAGGCCCAACAAC

GCCGGCCCTACCGCAGGCGAAGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAATATTCCAACCCT

CCTGTGCAGGGAGAAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGGCAGAATATGTA

TCGGGGATATAGACCACGATTCCGCAGTAGGGGCCCTCCTCGCCAAAGACAGCCTAGAGAGGACGGCAATGAAGAGGATA

AAGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATTACCGACGCAGA

CGCCCAGAAAACCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCGCTCCCGA

GGCTGAGCAGGGCGGGGCTGAGTAA

Library	Parental gene expression (RPM)
SRP051959_colon	93 .36 RPM
SRP051959_heart	196 .68 RPM
SRP051959_kidney	120 .78 RPM
SRP051959_liver	138 .35 RPM
SRP051959_lung	118 .83 RPM
SRP051959_lymph_node	96 .23 RPM
SRP051959_skeletal_muscle	179 .27 RPM
SRP051959_spleen	129 .50 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000000494	ortholog_one2one	9 retrogenes	retro_amel_1280, retro_amel_1358, retro_amel_141, retro_amel_1486, retro_amel_215, retro_amel_418, retro_amel_625, retro_amel_837, retro_amel_909,
Canis familiaris	ENSCAFG00000002541	ortholog_one2one	4 retrogenes	retro_cfam_1312, retro_cfam_2118, retro_cfam_758, retro_cfam_91,
Callithrix jacchus	ENSCJAG00000016581	within_species_paralog	1 retrogene	retro_cjac_1473,
Cavia porcellus	ENSCPOG00000010888	ortholog_one2one	3 retrogenes	retro_cpor_654, retro_cpor_833, retro_cpor_905,
Felis catus	ENSFCAG00000022604	ortholog_one2one	6 retrogenes	retro_fcat_145, retro_fcat_1554, retro_fcat_1956, retro_fcat_241, retro_fcat_503, retro_fcat_631,
Homo sapiens	ENSG00000065978	ortholog_one2one	4 retrogenes	retro_hsap_1433, retro_hsap_3886, retro_hsap_4250, retro_hsap_4301,
Loxodonta africana	ENSLAFG00000007597	possible_ortholog	1 retrogene	retro_lafr_804,
Microcebus murinus	ENSMICG00000014984	ortholog_one2one	19 retrogenes	retro_mmur_1098, retro_mmur_1285, retro_mmur_1326, retro_mmur_1435, retro_mmur_1437, retro_mmur_1445, retro_mmur_1621, retro_mmur_199, retro_mmur_315, retro_mmur_413, retro_mmur_581, retro_mmur_640, retro_mmur_676, retro_mmur_679, retro_mmur_726, retro_mmur_837, retro_mmur_900, retro_mmur_919, retro_mmur_942,
Macaca mulatta	ENSMMUG00000013136	ortholog_one2one	5 retrogenes	retro_mmul_1139, retro_mmul_1423, retro_mmul_2017, retro_mmul_423, retro_mmul_861,
Nomascus leucogenys	ENSNLEG00000012324	ortholog_one2one	7 retrogenes	retro_nleu_1053, retro_nleu_1188, retro_nleu_1312, retro_nleu_1601, retro_nleu_1749, retro_nleu_1888, retro_nleu_270,
Oryctolagus cuniculus	ENSOCUG00000028047	possible_ortholog	2 retrogenes	retro_ocun_1519, retro_ocun_1953,
Otolemur garnettii	ENSOGAG00000006784	possible_ortholog	25 retrogenes	retro_ogar_1127, retro_ogar_1246, retro_ogar_1350, retro_ogar_1371, retro_ogar_1497, retro_ogar_2011, retro_ogar_2018, retro_ogar_2302, retro_ogar_2359, retro_ogar_2607, retro_ogar_2654, retro_ogar_3170, retro_ogar_3225, retro_ogar_324, retro_ogar_3303, retro_ogar_3316, retro_ogar_3317, retro_ogar_3366, retro_ogar_3416, retro_ogar_3474, retro_ogar_448, retro_ogar_572, retro_ogar_678, retro_ogar_690, retro_ogar_753,
Pongo abelii	ENSPPYG00000001466	ortholog_one2one	7 retrogenes	retro_pabe_1216, retro_pabe_1320, retro_pabe_2054, retro_pabe_2292, retro_pabe_3167, retro_pabe_3388, retro_pabe_3502,
Pteropus vampyrus	ENSPVAG00000005504	ortholog_one2one	7 retrogenes	retro_pvam_1255, retro_pvam_1348, retro_pvam_1391, retro_pvam_145, retro_pvam_405, retro_pvam_76, retro_pvam_971,
Sorex araneus	ENSSARG00000007896	ortholog_one2one	1 retrogene	retro_sara_559,
Tupaia belangeri	ENSTBEG00000015642	possible_ortholog	9 retrogenes	retro_tbel_1183, retro_tbel_1955, retro_tbel_2347, retro_tbel_2694, retro_tbel_2702, retro_tbel_2961, retro_tbel_3590, retro_tbel_4037, retro_tbel_4478,
Tarsius syrichta	ENSTSYG00000006915	ortholog_one2one	6 retrogenes	retro_tsyr_1030, retro_tsyr_173, retro_tsyr_2037, retro_tsyr_610, retro_tsyr_840, retro_tsyr_996,
Tursiops truncatus	ENSTTRG00000001353	ortholog_one2one	2 retrogenes	retro_ttru_461, retro_ttru_746,
Vicugna pacos	ENSVPAG00000000068	ortholog_one2one	2 retrogenes	retro_vpac_235, retro_vpac_647,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_817	87.74	95.68	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_1261	76.09	73.11	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_1701	66.67	52.78	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_2718	73.31	98.46	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_3156	97.41	63.28	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_4172	94.80	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000003155 retrocopies

Parental gene:	YBX1, ENSCJAG00000003155
Aliases:	None
Description:	Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	7:77356146..77381121(+)

Parental gene:

YBX1, ENSCJAG00000003155