Parental gene: | CCDC12, ENSCJAG00000002280 |
| Aliases: | None |
| Description: | coiled-coil domain containing 12 [Source:HGNC Symbol;Acc:28332] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 15:22568066..22621268(-) |
>ENSCJAG00000002280
ATGGAGCCCACTGTGGCCGGTGTGGGCCGGCTAGAGGAAGAGGCACTGCGGCGAAAGGAACGGCTGAAGGCCCTACGGGA
GAAAACCGGGCGCAAGGACAAGGAAGATGGGGAGCCAAAGACCAAGCAACTTAGAGAAGAGGAGGAAGAAGGCGAGAAGC
ACAGGGAACTTAGACTGCGGAACTATGTCCCAGAGGATGAGGACCTGAAGAAGAGGAGGGTGCCCCAGGCCAAACCGGTT
GCAGGTAAGCGGGCTGCCTCTCTCCACCTCTGCTCCCTGGCACTGTCAGCTGCCCTCCGCCTCTGCAGGCTTTGCTCTCT
TAGAATAACCAGCAGTACCAGGACAGGAGTTGGGCCTGCAGGCAGGACCCTTTGTCACCATCTCATGGCAGATACACACA
GTTGGCCTTTGGTGGCAGCAGAGGCTGTCTGGGCACTGAAGAGGCCTCTTACGCCTTCTCAGTCCTGCTCATACCCTGAG
GCCGAGGCCTCCCAGGGATGTGAGTGGGGTCTGAAAGAATCCACATCCTCTTATAGGACTCCTGGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 6 .01 RPM |
| SRP051959_heart | 9 .31 RPM |
| SRP051959_kidney | 8 .03 RPM |
| SRP051959_liver | 6 .15 RPM |
| SRP051959_lung | 9 .34 RPM |
| SRP051959_lymph_node | 10 .84 RPM |
| SRP051959_skeletal_muscle | 10 .26 RPM |
| SRP051959_spleen | 7 .79 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dipodomys ordii | ENSDORG00000016567 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000000030 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000160799 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000019810 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000019659 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000006219 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000005086 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013924 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000014862 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000003265 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1212 | 69.79 | 53.07 | Please wait, loading  |
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| 2. | retro_cjac_2317 | 89.12 | 81.56 | Please wait, loading |
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| 3. | retro_cjac_3225 | 94.23 | 87.15 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000002280 retrocopies