Parental gene:

NDE1, ENSCAFG00000018722

Aliases:None
Description:Canis lupus familiaris nudE nuclear distribution gene E homolog 1 (A. nidulans) (NDE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252172]
Organism:Dog (Canis familiaris)
Coordinates:6:28143243..28186051(-)


>ENSCAFG00000018722
ATGGAAGACTCGGGAAAGACTTTCAGTTCTGAGGAGGAAGAAGCGAACTACTGGAAAGATCTGGCTATGACCTACAAGCA
GAGGGCAGAGAACACGCAGGAGGAACTCCGAGAATTCCAGGAGGGAAGCCGCGAATATGAAGCTGAATTGGAGACGCAGC
TGCAACAGATTGAAACCAGGAACAGGGACCTCCTGTCGGAGAATAACCGCCTTCGTATGGAGCTGGAAACCATCAAGGAG
AAGTTTGAAACTCAGCACTCCGAAGGCTACCGGCAGATTTCAGCCTTGGAGGATGACCTTGCCCAGACCAAAGCAATTAA
GGATCAACTTCAGAAATACATCAGAGAGCTGGAGCAAGCAAATGACGACTTGGAAAGAGCAAAACGCAGGGCCACGATCA
TGTCTCTGGAAGACTTTGAGCAGCGTTTGAATCAAGCCATTGAAAGAAATGCCTTCCTGGAGAGTGAGCTTGATGAGAAA
GAGAATCTCCTAGAATCTGTTCAGCGACTGAAGGATGAAGCCAGAGATTTGCGGCAGGAGTTGGCTGTGCAGCAGAAGCA
GGAGAAGCCCCGGACCCCCATGCCTAGCTCGGTGGAAGCCGAAAGGACAGACACAGCTGTGCAGGCCACTGGCTCTGTAC
CATCCACTCCCATAGCTCATCGGGGACCCAGCACTAGCTTAAACACACCAGGGACGTTCAGACGCGACCCAGGTCTGGAC
GACTCTATGGGTGGGACTCCCCTCACTCCTGCAGCACGGATATCGGCCCTCAACATTGTGGGAGACCTGCTTCGGAAAGT
AGGGGCCCTGGAGTCCAAACTTGCGTCCTGCCGGAATTTTGTGTATGATCAGTCCCCAAATCGAACAAGTGGCCCAGCCT
CCGGGCGGGGGAGCAAGCACAGAGATGGCAGTGAGAGACAGCCAAGCAGCACCGGCGTGCCTCTGGGTGATAAAGGGTTG
GGAAAACGCCTGGAATTTGGGAAGCCGCCTTCAAATATTTCCTCACCGTCGCTGCCGTCAGCCCAGGGTGTAGTCAAGAT
GTTGCTTTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 5 .46 RPM
SRP017611_brain 8 .02 RPM
SRP017611_kidney 3 .17 RPM
SRP017611_liver 1 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009557 ortholog_one2many 1 retrogene
retro_amel_104,
Choloepus hoffmanni ENSCHOG00000006004 ortholog_one2one 1 retrogene
retro_chof_1270,
Cavia porcellus ENSCPOG00000019614 ortholog_one2one 2 retrogenes
retro_cpor_875, retro_cpor_876,
Ictidomys tridecemlineatus ENSSTOG00000019896 ortholog_one2one 1 retrogene
retro_itri_1101,
Tupaia belangeri ENSTBEG00000005260 ortholog_one2one 1 retrogene
retro_tbel_1468,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1579 98.67 67.16
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Download FASTA sequences of all ENSCAFG00000018722 retrocopies