Parental gene:

ENSCAFG00000014018

Aliases:None
Description:Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:E2RQS7]
Organism:Dog (Canis familiaris)
Coordinates:8:22550531..22560450(-)


>ENSCAFG00000014018
ATGGCGGCGGCCGTTCCACAGCGGGCCTGGACCGTGGAGCAGCTGCGCAGCGAGCAACTACCCAAGAAGGACATTATCAA
GTTTCTACAGGACCACGGTTCAGATTCGTTTCTTGCAGAACATAAGTTATTAGGAAACATTAAAAATGTGGCCAAGACAG
CTAACAAGGACCATTTGGTTACAGCCTACAACCATCTTTTTGAAAGTAAGCGTTTCAAAGGTACTGAAAGTATAAGTAAA
GTGTCTGAGCAGGTGAAAAATGTGAAGCTTAATGAAGATAAACCCAAAGAAACCAAGTGTGAAGAGACTCTGGATGAGGG
TCCACCAAAATATACAAAATCTGTCCTTAAAAAAGGAGATAAAACCAACTTTCCCAAAAAGGGAGATGTTGTTCACTGCT
GGTATACAGGAACACTACAGGATGGGACTGTTTTTGATACTAATATTCAAACCAGTTCAAAGAAGAAGAAAAATGCCAAG
CCTTTAAGTTTTAAGGTTGGAATAGGCAAAGTTATCCGAGGATGGGATGAAGCACTCTTAACTATGAGTAAAGGAGAAAA
GGCTCGACTAGAGATTGAACCAGAATGGGCTTATGGAAAGAAAGGACAGCCTGATGCCAAAATTCCACCAAATGCAAAAC
TCATTTTTGAAGTGGAATTAGTGGATATTGATTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 27 .68 RPM
SRP017611_brain 35 .09 RPM
SRP017611_kidney 31 .04 RPM
SRP017611_liver 10 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000189 possible_ortholog 1 retrogene
retro_chof_2315,
Dipodomys ordii ENSDORG00000009462 ortholog_one2many 1 retrogene
retro_dord_106,
Equus caballus ENSECAG00000018299 possible_ortholog 2 retrogenes
retro_ecab_352, retro_ecab_565,
Echinops telfairi ENSETEG00000003358 possible_ortholog 8 retrogenes
retro_etel_1114, retro_etel_1484, retro_etel_1491, retro_etel_1499, retro_etel_1774, retro_etel_2130, retro_etel_2200, retro_etel_997,
Felis catus ENSFCAG00000027304 ortholog_one2one 1 retrogene
retro_fcat_1894,
Loxodonta africana ENSLAFG00000003572 ortholog_many2many 2 retrogenes
retro_lafr_357, retro_lafr_76,
Macropus eugenii ENSMEUG00000004962 ortholog_one2many 1 retrogene
retro_meug_679,
Microcebus murinus ENSMICG00000005808 ortholog_one2many 2 retrogenes
retro_mmur_1582, retro_mmur_351,
Macaca mulatta ENSMMUG00000016512 ortholog_one2many 2 retrogenes
retro_mmul_2094, retro_mmul_735,
Monodelphis domestica ENSMODG00000007352 ortholog_one2many 1 retrogene
retro_mdom_1554,
Mus musculus ENSMUSG00000020949 ortholog_one2many 1 retrogene
retro_mmus_1322,
Otolemur garnettii ENSOGAG00000003012 ortholog_many2many 2 retrogenes
retro_ogar_2247, retro_ogar_3472,
Ochotona princeps ENSOPRG00000011126 ortholog_one2many 2 retrogenes
retro_opri_204, retro_opri_600,
Procavia capensis ENSPCAG00000011316 possible_ortholog 2 retrogenes
retro_pcap_454, retro_pcap_78,
Rattus norvegicus ENSRNOG00000004629 ortholog_one2many 1 retrogene
retro_rnor_1165,
Ictidomys tridecemlineatus ENSSTOG00000002249 ortholog_one2many 1 retrogene
retro_itri_650,
Tupaia belangeri ENSTBEG00000006017 ortholog_one2many 13 retrogenes
retro_tbel_1032, retro_tbel_1125, retro_tbel_1696, retro_tbel_1783, retro_tbel_2151, retro_tbel_2569, retro_tbel_3297, retro_tbel_3567, retro_tbel_3807, retro_tbel_4222, retro_tbel_4482, retro_tbel_730, retro_tbel_800,
Tarsius syrichta ENSTSYG00000002125 possible_ortholog 2 retrogenes
retro_tsyr_515, retro_tsyr_820,
Tursiops truncatus ENSTTRG00000006664 possible_ortholog 1 retrogene
retro_ttru_1041,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_440 87.29 52.68
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cfam_616 97.42 69.20
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cfam_798 89.04 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_cfam_1788 91.78 64.73
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCAFG00000014018 retrocopies