Parental gene:

RNF138, ENSBTAG00000020160

Aliases:None
Description:E3 ubiquitin-protein ligase RNF138 [Source:UniProtKB/Swiss-Prot;Acc:Q32LN5]
Organism:Cow (Bos taurus)
Coordinates:24:25388381..25428221(-)


>ENSBTAG00000020160
ATGGCCGAGGAGCTCTCCGCGGCCACGTCCTACACCGAAGATGATTTCTACTGCCCCGTCTGTCAGGAGGTGCTCAAAAC
GCCTGTGCGGACTGCGGCCTGTCAGCACGTTTTTTGTAGAAAGTGTTTCCTGACTGCAATGAGAGAAAGCGGAATACATT
GTCCCCTCTGTCGTGGAAATGTGACTAGAAGAGAGAGAGCATGTCCTGAACGGGCCTTAGACCTTGAAAATATCATGAGG
AAATTTTCTGGTAGCTGCAGATGCTGTGCAAAACAGATTAAATTCTATCGCATGAGACATCATTACAAATCTTGTAAGAA
GTATCAAGATGAATATGGTGTTTCTTCTATCATTCCAAACTTTCAGATCTCTCAAGATTCAGTAGGAAACAGTAACAGGA
GTGAAACATCTGCATCTGATAACATAGAAACTTACCAAGAGAATACAGGTTCTTCTGGGCATCCTACTTTTAAGTGTCCC
TTGTGTCAAGAATCAAATTTTACCAGACAGCGTTTACTGGATCATTGTAACAGTAATCACCTATTTCAGATAGTTCCTGT
GACGTGTCCTATTTGTGTGTCTCTTCCTTGGGGAGATCCTAGCCAGGTTACTAGAAATTTTGTTAGTCATCTAAATCAAA
GACATCAGTTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAGGAAACCCAGTATCAAACTGCGGTTGAAGAATCT
TTTCAAGTAAACATTTGA

Library Parental gene expression (RPM)
ERP005899_liver 3 .75 RPM
ERP005899_muscle 4 .12 RPM
SRP017611_brain 4 .16 RPM
SRP017611_kidney 4 .74 RPM
SRP017611_liver 2 .49 RPM
SRP030211_testis 71 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012689 ortholog_one2one 6 retrogenes
retro_chof_1043, retro_chof_1242, retro_chof_1931, retro_chof_418, retro_chof_714, retro_chof_793,
Callithrix jacchus ENSCJAG00000020875 ortholog_one2one 1 retrogene
retro_cjac_2325,
Felis catus ENSFCAG00000014180 ortholog_one2one 2 retrogenes
retro_fcat_1383, retro_fcat_379,
Homo sapiens ENSG00000134758 ortholog_one2one 1 retrogene
retro_hsap_3319,
Gorilla gorilla ENSGGOG00000027857 ortholog_one2one 1 retrogene
retro_ggor_1302,
Loxodonta africana ENSLAFG00000003811 ortholog_one2one 1 retrogene
retro_lafr_408,
Monodelphis domestica ENSMODG00000010850 ortholog_one2many 4 retrogenes
retro_mdom_1468, retro_mdom_387, retro_mdom_708, retro_mdom_725,
Mustela putorius furo ENSMPUG00000006982 ortholog_one2one 1 retrogene
retro_mputfur_276,
Nomascus leucogenys ENSNLEG00000006401 ortholog_one2one 1 retrogene
retro_nleu_1665,
Pongo abelii ENSPPYG00000009094 ortholog_one2one 1 retrogene
retro_pabe_2734,
Pan troglodytes ENSPTRG00000009956 ortholog_one2one 1 retrogene
retro_ptro_2155,
Pteropus vampyrus ENSPVAG00000003778 ortholog_one2one 2 retrogenes
retro_pvam_1316, retro_pvam_1379,
Rattus norvegicus ENSRNOG00000015645 ortholog_one2one 3 retrogenes
retro_rnor_2316, retro_rnor_808, retro_rnor_965,
Ictidomys tridecemlineatus ENSSTOG00000002293 ortholog_one2one 2 retrogenes
retro_itri_1443, retro_itri_576,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_322 77.42 100.00
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Download FASTA sequences of all ENSBTAG00000020160 retrocopies