Parental gene:

ENSAMEG00000003497

Aliases:None
Description:None
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192976.1:21274..23055(-)


>ENSAMEG00000003497
ATGGGCGCTTACAAGTACATCCAGGAGCTATGGAGGAAGAAGCAGTCCGATGTAATGCGCTTTCTTCTCAGGGTGCGCTG
CTGGCAGTACCGCCAGCTCTCTGCGCTCCACAGGGCCCCCCGCCCAACCCGGCCTGATAAAGCGCGCAGGCTGGGGTACA
AGGCCAAGCAAGGTTATGTCATATATCGGATTCGTGTGCGTCGTGGTGGCCGCAAACGCCCAGTTCCTAAGGGTGCTACC
TACGGCAAGCCTGTCCATCATGGTGTTAACCAGCTAAAGTTTGCCCGAAGCCTTCAGTCTGTTGCAGAGGAGCGAGCTGG
ACGCCACTGTGGGGCTCTGAGAGTCTTGAATTCTTACTGGGTTGGCGAAGATTCTACATACAAATTCTTTGAGGTTATCC
TCATTGATTCACTCCATAAAACTATCAAAAGAGATCCTGATCCCAAATGGATCACCAAACCAGTCCACAAGCACAGGGAG
ATGCGAGGGCTGACATCTGCAGGCCGCAAGAGCCGTGGCCTTGGAAAGGGTCACAAGTTCCACCACACTATTGGTGGTTC
TCGCCGTGCGGCATGGAGAAGACGCAATACTCTCCAACTCCACCGTTACCGCTAA

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000003810 ortholog_one2one 23 retrogenes
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
Equus caballus ENSECAG00000010157 ortholog_one2one 1 retrogene
retro_ecab_38,
Loxodonta africana ENSLAFG00000004155 possible_ortholog 1 retrogene
retro_lafr_677,
Procavia capensis ENSPCAG00000011995 possible_ortholog 1 retrogene
retro_pcap_265,
Pongo abelii ENSPPYG00000014065 ortholog_one2one 18 retrogenes
retro_pabe_1073, retro_pabe_1201, retro_pabe_1480, retro_pabe_1896, retro_pabe_2049, retro_pabe_2377, retro_pabe_2433, retro_pabe_2467, retro_pabe_2562, retro_pabe_3004, retro_pabe_3028, retro_pabe_3098, retro_pabe_561, retro_pabe_597, retro_pabe_642, retro_pabe_705, retro_pabe_801, retro_pabe_816,
Pan troglodytes ENSPTRG00000014695 ortholog_one2one 14 retrogenes
retro_ptro_1178, retro_ptro_1646, retro_ptro_1942, retro_ptro_2064, retro_ptro_2090, retro_ptro_2483, retro_ptro_2572, retro_ptro_435, retro_ptro_459, retro_ptro_550, retro_ptro_646, retro_ptro_663, retro_ptro_886, retro_ptro_991,
Pteropus vampyrus ENSPVAG00000001771 ortholog_one2one 13 retrogenes
retro_pvam_1016, retro_pvam_1067, retro_pvam_1178, retro_pvam_1280, retro_pvam_1386, retro_pvam_1422, retro_pvam_176, retro_pvam_338, retro_pvam_397, retro_pvam_538, retro_pvam_634, retro_pvam_766, retro_pvam_83,
Tursiops truncatus ENSTTRG00000007244 ortholog_one2many 5 retrogenes
retro_ttru_1305, retro_ttru_1358, retro_ttru_280, retro_ttru_920, retro_ttru_987,
Vicugna pacos ENSVPAG00000008573 ortholog_one2one 2 retrogenes
retro_vpac_34, retro_vpac_522,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_516 66.87 78.92
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2. retro_amel_548 59.83 56.37
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3. retro_amel_712 69.38 99.51
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4. retro_amel_1281 69.12 65.69
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5. retro_amel_1470 70.39 99.51
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6. retro_amel_1519 66.85 88.73
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Download FASTA sequences of all ENSAMEG00000003497 retrocopies