RetrogeneDB ID: retro_ttru_751

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_3269:474745..475339(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AKR1A1
• Ensembl ID: ENSTTRG00000012180
• Aliases: None
• Description: aldo-keto reductase family 1, member A1 (aldehyde reductase) [Source:HGNC Symbol;Acc:380]

Sequence

>retro_ttru_751
GGAGACAACCCCTTTCCTAAGAATGCTGATGGGACTATACGCTATGACTCCACTCACTACAAGGAGACTTGGAAGGCTCT
GGAGGCACCGGTGGCTAAGGGGTTGGTGAGGGCACTGGGCCTGTCCAACTTCAGCAGTGAGCAGATCGATGATGTGCTCA
GTGTGGCCTCGGTGCGCCCAGCTGTCCTGCAGGTGGAATGCCACCCATACCTGGCTCAGAATGAGCTGATTGCCCACTGC
CAAGCACGCGGCCTGGAGGTGACTGCTTATAGCCCTCTGGGCTCCTCTGAGCGTGCTTGGCGTGATCCTGATGAGCCTGT
CCTGCTTGAGGAGCCAGTGGTCCTGGCACTGGCTGAAAATCATGGCCGGTCTCCAGCTCAGATCTTGCTCAGGTGGCAGG
TCCAGCTGAAAGTGAGCTGCATCCCCAAGAGTGTCACACCTTCCCATATCCTTCAGAACATCCAGGTGTTTGACTTCACC
TTTAGCGTGGAGGAGATGAAGCAGCTGGATGCCCTGAATAAAAATTTGCTATTCATCATGCCCATGCTTACGGTGGATGG
GAAGAGGGCCCCGAGAGATGCAGGTCACCCCCTT

Alignment

ORF - retro_ttru_751 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.94 %
• Parental protein coverage: 61.3 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GDNPFPKNADGTIRYDSTHYKETWKALEALVAKGLVRALGLSNFSSRQIDDVLSVASVRPAVLQVECHPY
          GDNPFPKNADGTIRYDSTHYKETWKALEA.VAKGLVRALGLSNFSS.QIDDVLSVASVRPAVLQVECHPY
Retrocopy GDNPFPKNADGTIRYDSTHYKETWKALEAPVAKGLVRALGLSNFSSEQIDDVLSVASVRPAVLQVECHPY

Parental  MAQNELIAHCRARGLEVTAYSPLGSSDRAWRDPDEPVLLEEPVVLALAEKYGRSPAQILLRWQVQRKVSC
          .AQNELIAHC.ARGLEVTAYSPLGSS.RAWRDPDEPVLLEEPVVLALAE..GRSPAQILLRWQVQ.KVSC
Retrocopy LAQNELIAHCQARGLEVTAYSPLGSSERAWRDPDEPVLLEEPVVLALAENHGRSPAQILLRWQVQLKVSC

Parental  IPKSVTPSHILQNIQVFDFTFSLEEMKQLDALNKNLRFIVPMLTVDGKRVPRDAGHPL
          IPKSVTPSHILQNIQVFDFTFS.EEMKQLDALNKNL.FI.PMLTVDGKR.PRDAGHPL
Retrocopy IPKSVTPSHILQNIQVFDFTFSVEEMKQLDALNKNLLFIMPMLTVDGKRAPRDAGHPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_751 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_751 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000004549	1 retrocopy	retro_cfam_558,
Callithrix jacchus	ENSCJAG00000013633	2 retrocopies	retro_cjac_3093, retro_cjac_3334,
Echinops telfairi	ENSETEG00000006450	1 retrocopy	retro_etel_1106,
Macropus eugenii	ENSMEUG00000007370	1 retrocopy	retro_meug_1,
Otolemur garnettii	ENSOGAG00000007175	2 retrocopies	retro_ogar_1522, retro_ogar_2582,
Tarsius syrichta	ENSTSYG00000005301	1 retrocopy	retro_tsyr_1409,
Tursiops truncatus	ENSTTRG00000012180	1 retrocopy	retro_ttru_751 ,