RetrogeneDB - Retrocopy retro_tsyr

                        
>retro_tsyr_623
AAGAATGTACAAAAGTTTATGAAAATTGATCAGGCATGGAAAATTCTAGGAAATGAAGAGACCAAAAAAGAGTATGATCT

GCAGTGGCATGAAGATGATCTAAGCAATATCGGACCAGTAGATGGTCAAATATATCTTGAAGAAATGCTTTGGAATGAAG

ATGATCATTCTTTTTCTCTGAGTTGCTGATGTGATAGAAAATACAGTGGTTTCAAGGATGAAGCAGGAGTTAATCTGATT

TCTTGTGATACATCGTCACTAAATATAGAACTT

ORF - retro_tsyr_623 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	58.7 %
Parental protein coverage:	61.74 %
Number of stop codons detected:	1
Number of frameshifts detected:	0

Retrocopy - Parental Gene Alignment:

                                ParentalRSAQRFLEVGRAWKVLGNAEARREYDLRRREDDLRNTGPVDAQVYLEEMSWNEDDHSFHLRCRCSGNYSV
...Q.F.....AWK.LGN.E...EYDL...EDDL.N.GPVD.Q.YLEEM.WNEDDHSF.L.C.C...YS.
RetrocopyKNVQKFMKIDQAWKILGNEETKKEYDLQWHEDDLSNIGPVDGQIYLEEMLWNEDDHSFSLSC*CDRKYSG
ParentalSKAEAEEVHLIPCDSCSLIIEL
.K.EA..V.LI.CD..SL.IEL
RetrocopyFKDEA-GVNLISCDTSSLNIEL

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tarsius syrichta was not studied using ChIP-Seq data.

EST - click to see more details

Tarsius syrichta was not studied using EST data.

TSS - click to see more details

Tarsius syrichta was not studied using FANTOM5 data.

Lab - click to see more details

retro_tsyr_623 was not experimentally validated.

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 11 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000013512	1 retrocopy	retro_dnov_2247,
Dipodomys ordii	ENSDORG00000000248	3 retrocopies	retro_dord_221, retro_dord_395, retro_dord_77,
Echinops telfairi	ENSETEG00000003054	1 retrocopy	retro_etel_161,
Microcebus murinus	ENSMICG00000007553	3 retrocopies	retro_mmur_1052, retro_mmur_1150, retro_mmur_973,
Macaca mulatta	ENSMMUG00000006845	1 retrocopy	retro_mmul_2112,
Nomascus leucogenys	ENSNLEG00000017878	1 retrocopy	retro_nleu_3029,
Otolemur garnettii	ENSOGAG00000007848	1 retrocopy	retro_ogar_1542,
Ochotona princeps	ENSOPRG00000001638	1 retrocopy	retro_opri_881,
Pongo abelii	ENSPPYG00000003390	2 retrocopies	retro_pabe_2783, retro_pabe_2788,
Pan troglodytes	ENSPTRG00000003471	1 retrocopy	retro_ptro_2301,
Tarsius syrichta	ENSTSYG00000009243	1 retrocopy	retro_tsyr_623 ,

	RetrogeneDB ID:	retro_tsyr_623
Retrocopy location	Organism:	*Tarsier (Tarsius syrichta)*
	Coordinates:	scaffold_15283:27469..27742(-)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	DNAJC24
	Ensembl ID:	ENSTSYG00000009243
	Aliases:	None
	Description:	DnaJ (Hsp40) homolog, subfamily C, member 24 [Source:HGNC Symbol;Acc:26979]

Parental	RSAQRFLEVGRAWKVLGNAEARREYDLRRREDDLRNTGPVDAQVYLEEMSWNEDDHSFHLRCRCSGNYSV
	...Q.F.....AWK.LGN.E...EYDL...EDDL.N.GPVD.Q.YLEEM.WNEDDHSF.L.C.C...YS.
Retrocopy	KNVQKFMKIDQAWKILGNEETKKEYDLQWHEDDLSNIGPVDGQIYLEEMLWNEDDHSFSLSC*CDRKYSG

Parental	SKAEAEEVHLIPCDSCSLIIEL
	.K.EA..V.LI.CD..SL.IEL
Retrocopy	FKDEA-GVNLISCDTSSLNIEL

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_tsyr_623