RetrogeneDB ID: retro_tbel_3653

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_147961:10802..11385(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZRANB2
• Ensembl ID: ENSTBEG00000002316
• Aliases: None
• Description: zinc finger, RAN-binding domain containing 2 [Source:HGNC Symbol;Acc:13058]

Sequence

>retro_tbel_3653
TATAGTGATGGTTTTAATGAAAGAGAAAATATTGAGTGCATAGAAAGAGAAGAATCTGATGGTGAATATGACAAGTTTGG
ACTAAAATAATAATAATAATAAAGAGGAAAAGCAATTGGTCCTGCATTTATACTAAAGGAAGCTGAAGAGAAACAATCAG
AGGGTAAAGAAGAGGATGAGAATGAAGATCTTTCTAAATATAAATTAAAAGAGGATGAGGATGAAGATGATGCCCATCTC
TCAAAGTATAATCTTGATGCCAGCAAAGAAGAGAACAATAAAAAGAAATCTAATAGACAAAGTAACTCAAAGTCTCAATT
CTCATATTCACAATCTTCATCATCCTCATCTCTCCCTCAAGTTCAAGGTCTAGGTCCAGGTCCTGTTCAAGAAGTTCTTC
CATCTCGCAGTCAAGATCTCATTCCAGTTCCAGAGAACGTTCGCAATCTCTTGGGTCAGAATCAAGCTTCAATATCCCAC
AGGGGTTCTTCTTCCCCATGGAAAGTATTTTATTCAAGCTCATCATCTTCTCCTGAGAGGAACAGAAAGAGAAGTCATTC
TAGTTTTTCTTCATCTGGTAATT

Alignment

ORF - retro_tbel_3653 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.73 %
• Parental protein coverage: 63.31 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  YGGGFNERENVEYIEREESDGEYDEFGRKKKKYR-GKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLD
          Y..GFNEREN.E.IEREESDGEYD.FG........GKA.GPA.ILKE.E.K.SEG.EEDE.EDLSKYKL.
Retrocopy YSDGFNERENIECIEREESDGEYDKFGXXXXXXXXGKAIGPAFILKEAEEKQSEGKEEDENEDLSKYKLK

Parental  EDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS-SPSSSRSRSRSRSRSSSSSQS
          EDEDEDDA.LSKYNLDAS.EE..NKKKSNR.S.SKS..S.S.SSS.SS.SPSSSRSRSRS.SRSSS.SQS
Retrocopy EDEDEDDAHLSKYNLDASKEE-NNKKKSNRQSNSKSQFSYSQSSSSSS<SPSSSRSRSRSCSRSSSISQS

Parental  RSRSSSRERSRSRGSKS-RSSSRTGALLPHEKDLIRVHHLLLRGTEREVVLDLLHLVI
          RS.SSSRERS.S.GS.S......TG.LLPH.K..I..HHLLLRGTEREV.L..LHLVI
Retrocopy RSHSSSRERSQSLGSES<KLQYPTGVLLPHGKYFIQAHHLLLRGTEREVILVFLHLVI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_3653 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_3653 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006356	2 retrocopies	retro_cjac_2350, retro_cjac_4199,
Macaca mulatta	ENSMMUG00000017312	2 retrocopies	retro_mmul_2602, retro_mmul_2618,
Monodelphis domestica	ENSMODG00000000504	2 retrocopies	retro_mdom_1975, retro_mdom_443,
Tupaia belangeri	ENSTBEG00000002316	3 retrocopies	retro_tbel_122, retro_tbel_3653 , retro_tbel_4007,