RetrogeneDB ID:

retro_onil_30

Retrocopy
location
Organism:Tilapia (Oreochromis niloticus)
Coordinates:GL831182.1:3862893..3868698(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSONIG00000021261
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:smyhc3
Ensembl ID:ENSONIG00000008086
Aliases:None
Description:slow myosin heavy chain 3 [Source:ZFIN;Acc:ZDB-GENE-080930-1]


Retrocopy-Parental alignment summary:






>retro_onil_30
ATGGGCGACTCTCTGATGGCCGAGTTTGGGAAGGCTGCTCCTTACCTGAGGAAGTCTGAGAAGGAGCGTCTGGAGGCTCA
GACCAGACCCTTTGACATCAAGACTGAATGTTTTGTAGTTGACACTAAAGAAGAATATGTCAAGGGAAAAATCCTGAGCA
AGGACGGAGGGATGGTGACGGTCCAGAAGGAAGATGGAACAACGGTGACAGTTAAGGAATCTGACACTCACCCCCAGAAC
CCACCCAAGTTTGATAAAATCGAAGACATGGCAATGTTTACATTCCTCCACGAGCCCGCCGTGCTGTTTAACCTCAAAGA
GCGTTACGCAGCCTGGATGATCTATACCTACTCCGGGCTCTTCTGTGTCACCGTCAACCCCTACAAGTGGCTTCCTGTCT
ATGATGCTGAAGTGGTGGCTGCCTACAGGGGGAAGAAGAGGAGCGAGGCCCCTCCTCACATCTTTTCCATTTCTGATAAT
GCCTACCAGTACATGCTGACAGACCGGGAGAACCAGTCGGTCCTCATCACCGGAGAATCTGGAGCAGGAAAGACTGTGAA
CACCAAGAGAGTCATTCAGTACTTTGCCAGCATCGCTGCAGTTGGTGGTGCAAGCAAAAAAGACAGCAGCAAGGGGACTC
TGGAGGATCAAATCATCCAGGCGAACCCGGCACTGGAGGCCTTTGGCAATGCCAAAACGGTGAGAAACGACAACTCGTCA
CGTTTTGGAAAATTTATCCGAATCCATTTCGGCACGAGCGGTAAGCTGTCGTCTGCTGACATAGAGACGTATCTGCTAGA
GAAGTCACGAGTTACCTTTCAGCTAAAGGCCGAAAGGAATTACCACATATTTTACCAGATCCTGTCCAATCAGAAGCCAG
AGTTGTTGGACATGCTGTTGATCACCAACAACCCATATGACTACTCCTACATCTCCCAAGGAGAGGTAACAGTTGCTTCC
ATCAACGACTCGGAGGAGCTGATGGCCACCGATGGTGCCTTTGATGTGCTTGGCTTCACTCCAGAGGAGAAAATGAGTGT
CTACAAGCTAACTGGTGCCATTATGCACTATGGCAACATGAAGTTCAAACAGAAGCAGCGCGAGGAGCAGGCTGAACCTG
ATGGAACTGAGGCTGCTGATAAATCAGCTTACTTGATGGGGCTCAACTCTGCTGATCTCATCAAAGGGCTTTGCCACCCC
CGAGTTAAGGTAGGAAATGAATATGTCACCAAAGGGCAGAGTGTGGACCAAGTTTACTATGCCATTGGTGCTCTGGCTAA
GTCAGTGTATGAGAAGATGTTCAATTGGATGGTGGTGAGAATTAACCAATCACTGGACACCAAACAGCACCGTCAGTACT
TCATAGGAGTGCTGGACATCGCCGGGTTTGAGATCTTTGATTTCAACACCTTTGAGCAGCTGTGCATCAACTTTACCAAT
GAGAAACTGCAACAGTTTTTCAACCACCACATGTTCATCTTGGAGCAAGAGGAGTACAAAAAAGAAGGAATCGAATGGGA
GTTCATTGACTTTGGCATGGACCTCCAGGCCTGCATAGACTTGATTGAGAAACCTCTGGGGATCCTGTCCATTCTGGAGG
AAGAATGCATGTTTCCCAAAGCTAGCGACCAGACCTTCAAGGCCAAGCTCTATGACAACCATCTGGGTAAGAACAAGATG
TTTGAGAAGCCTCGGGCAGCAAAGGGGAAAGCAGAGGCCCATTTCGCCCTTGTTCACTATGCTGGGACAGTGGACTACAA
CATCGCTGGCTGGCTGGTCAAAAACAAAGACCCCCTAAATGAGACAGTGGTTGGTCTTTATCAGAAATCCTCTCTGAAGC
TTCTCAGTCTTCTGTTTTCAAACTATGCAGGAGCTGATGGAGGAGACAAGGGAAGTGGAAAAGGAGCCAAGAAGAAAGGC
TCCTCCTTTCAGACGGTGTCTGCGCTTCACAGAGAAAACCTGAACAAGCTGATGACAAACCTGAAGACCACTCATCCACA
CTTTGTCCGCTGTCTGATTCCTAATGAAAGGAAAACTCCAGGAGTCATGGACAACTGCCTCGTGATGCACCAGCTACGCT
GTAATGGGGTCCTGGAAGGCATCCGGATTTGCAGGAAAGGTTTTCCAAACAGGGTGCTCTACGGAGACTTCAAACAGAGG
TACAGGATCTTGAATGCATCCGCCATCCCAGAGGGTCAGTTCATAGACTGCAAGAAAAGTACTGAAAAGCTGTTAGGATC
GCTGGACATTGACCACACTCAGTATAAGTTTGGTCACACAAAAGTCTTTTTTAAAGCCGGCCTGCTGGGTACACTGGAGG
AGATGCGAGATGAGCAACTCTCTCGAATCATCACCAGGATCCAGGCCAATGCCCGAGGGCTCCTCATGAGGAAGGAGTTT
ATTAAGCTTGTGGAACGTAGAGATGCCCTGATGGTCATTCAGTGGAACCTTCGGTCTTTCCTTGGGGTGAAAAACTGGCC
CTGGATGAAACTCTTCTTCAAGATCAAACCCCTGCTGAAGAGTGCAGAGTCTGAGAAGGAGATGGCCAACATGAAGGATG
AATTCAACAAGCTAAAGGAAACTCTGGAGAAATCAGAGGCAAGACGAAAAGAACTGGAGGAGAAAATAGTGACTCTCCTC
CAAGAGAAGAATGATCTGACCCTTCAGATTCAGTCTGAACAGGACACCCTAACTGATGCTGAGGAACGCTGTGAACAGCT
GATCAAGAGTAAGATTCAACTGGAGGCAAAGCTAAAAGAAATGACAGAAAGACTGGAGGATGAAGAGGAGCTGAACGCTG
ATCTGACAGCAAAGAAACGCAAGCTTGAAGATGAATGTTCAGAGCTGAAGAAGGACATAGATGACCTGGAGCTAACGTTA
GCCAAGGTGGAAAAAGAGAAACATGCTACAGAGAATAAGGTGAAAAACCTGATGGAGGAGATGGCTTCACAGGATGAGAA
CATCGCAAAGCTAACCAAAGAGAAGAGGGCGCTGCAGGAGGCTCACCAGCAAACTCTGGATGACCTGCAGAGTGAAGAAG
ACAAAGCTAACACTTTGACCAAAGCTAAAGCTAAGCTGGAGCAACAAGTGGATGATCTGGAGGGATCGCTGGAGCAAGAG
AAGAAAGTCAGGATGGACCTGGAGCGCTCAAAGAGGAAGCTCGAGGGAGACCTGAAACTGATCCAGGAGAACTTGATGGA
CTTGGAGAATGACAAGCAGCAGCTGGAGGAAAAAATCAAGAAGAAAGACTTTGAGGTCACCCAAATAACTTCAAGACTAG
AAGATGAGCAGATTGCATCAGTTCAGCTCCAGAAGAAGCTCAAAGAAAGCCAGGCAAGAATTGAGGAGGTGGAGGAGGAG
CTGGATGCTGAGCGAGCAGCCCGGGCCAAGGTGGAGAAACAGCGTTCTGATCTTTCCCGCGAGCTTGAGGACATCAGTGA
ACGTCTAGAGGAAGCTGGAGGAGCCACATCAGCTCAGGTGGAGCTGAATAAAAAGAGAGAAGCTGAGTTTCAGAAGCTGC
GTAGAGAGCTGGAGGAATCAACCCTGCAACATGAGGCCACCGCTGCCACCCTGAGGAAGAAACATGCCGACACCGTCGCT
GAACTGGGAGAACAGATTGATAACCTTCAGCGTGTCAAACAAAAACTGGAGAAGGAAAAGAGTGAGCTGAAGCTAGAGCT
CGATGACTTGTGCTCAAACATGGAAAATGTAGTGAAGACAAAGGCAAACTTTGAGAAAATGTGCCGAACGATGGAAGACA
ACATGAATGAGTACAAGAGCAAATGTGAGGAGGCTCAAAGGACCATCAATGAGCTGACAACCCAGAGGGCCAAGCTCCTC
ACTGAAAATGGTGAGCTTGGCCGGCAGCTGGAGGAGAAGGATTGTCTGATATCACAGCTTACTCGAGGGAAGAACTCGTA
CAACCAGCAGATGGAAGATCTGCGCAGACAGCTGGAGGAGGAACTAAAGGCAAAGAACGCTCTTGCCCATGCTGTTCAGT
CTGCTCGTCATGACTGTGATCTGCTCCGAGAACAATTTGAGGAAGAGCAGGAAGCCAAGGCTGAACTGCAGAGAGCTCTG
TCTAAATCCAACACTGAAATCTCTGCATGGAGGACCAAATATGAAACGGACGGCATCCAGAGAACTGAGGAGCTGGAAGA
AGCAAAAAAGAAGCTTGTTCAGAGACTGCAGGAGGCCGAGGAGGCCATTGAGGCTGTGAACGCAAAGTGTTCGTCCCTTG
AGAAAACCAAACACCGGCTCCAAAATGAGATTGAAGACCTCATGCTGGACCTGGAGAGATCTAATGCGGCATCCGCAGCA
CTGGACAAAAAACAAAGAACCTTTGACAAAGTCTTGGCAGAGTGGAAGCAAAAATTTGAGGAGTCGCAGTGTGAGTTAGA
GGCATCTCAGAAAGAGGCTCGATCTCTGAGCACTGAGCTCTTCAAACTCAGGAATGCCTATGAAGAATGTCTGGATCAAC
TCGAGACAATGAAGAGAGAGAATAAAAATCTCCAAGAAGAAATCTCAGACCTCACTGACCAGCTGGGAGAAGGTGGCCGC
AGCGCCCACGAACTAGAGAAGATCAGAAAGGAACTTGAACAAGAAAAGGTTGAGCTACAGTCGGCGCTGGAGGAAGCTGA
AGGTTCCCTGGAGCATGAAGAGAGCAAGATCCTCAGAGCTCAACTGGAGTTCAACCAAGTGAAGGCTGACATGGAGCGCA
AGCTGGCCGAGAAAGACGAGGAAATGGACCAGGCCAAGAGGAACTACCAGCGTATGGTGGAATCACTACAGTCCTCTCTG
GAGTCCGAAACCAGGAGCCGAAATGAAGCCATGAGAGTAAAGAAGAAGATGGAAGGTGACCTCAATGAGATGGAGATTCA
GCTGAGCCAAGCTAACAGGCAGGCAGCTGAAGCCCAGAAACAGGTGAAGACCCTCCAGGCGTTCCTGAAGGACACTCAGC
TGCAACTAGATGACACGCAGCATGGCAACGATGACCTGAAAGAAAACATTGCTCTGCTTGAACGCCGAAACAACCTCATC
CAGGCTGAACTGGAGGAAGTGAGAGCCGCACTCGAGCAGACTGAGAGAAGTCGGAAACTGGCCGAACAGGAGCTGACCGA
GGCAACGGAGCGAATGCAACTCCTGCACTCCCAAAACACCAGCCTGATCAACCAGAAGAAGAAGCACGAAGCAGACCTCC
TACACCTGCAGTGTGAGGTGGAGGAAGCCATACAGGAGAACCGCAATGCTGAGGAGAAGGCAAAGAAGGCGATCACAGAT
GCAGCCATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCATCTGGAGCGCATGAAGAAGAACATGGAGCA
GACCATCAAAGACCTGCAGCACCGTCTGGATGAGGCCGAGCAGATCGCCATGAAGGGTGGCAAGAAGCAGCTCCAGAAAC
TGGAGACTCGCATCAAAGAGCTGGAGAATGAGCTGGAGGCAGAGCAGAAGAGGGGAGCCGAGTCCATCAAAGGGGTTCGC
AAGTACGAGCGCCGCATCAAAGAGCTCACCTACCAGACCGAGGAGGACCGCAAGAACATGGCCCGCCTCCAGGACCTGGT
CGACAAGCTGCAGCTGAAGGCCAAGTCCTACAAGAGAGCGGCCGAGGAGGCCGAGGAGGCGGCCAACATCAACATGGCAA
AACTACGCAAGCTGCAGCACGAGCTGGAGGAGGCGGAGGAGCGGGCAGACATCGCCGAGTCGCAGGTGAACAAGCTGAGG
GCAAAGACTAGGGATGGATCGTCTAAAAAGGGCCTGGATGAGTGA

ORF - retro_onil_30 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.39 %
Parental protein coverage: 99.79 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalGDAIMAEFGSAASFLRKSDKERLEAQTRPFDMKKACFVPDPEVEYVKASVISRDGDKVTVETEFGKTVTH
GD..MAEFG.AA..LRKS.KERLEAQTRPFD.K..CFV.D...EYVK....S.DG..VTV..E.G.TVT.
RetrocopyGDSLMAEFGKAAPYLRKSEKERLEAQTRPFDIKTECFVVDTKEEYVKGKILSKDGGMVTVQKEDGTTVTV
ParentalKEADIHPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYDKSVVAA
KE.D.HPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYD..VVAA
RetrocopyKESDTHPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYDAEVVAA
ParentalYRGKKRSEAPPHIYSISDNAYQYMLADRENQSILITGESGAGKTVNTKRVIQYFASIAAVSGKKDEKQEK
YRGKKRSEAPPHI.SISDNAYQYML.DRENQS.LITGESGAGKTVNTKRVIQYFASIAAV.G....K...
RetrocopyYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSVLITGESGAGKTVNTKRVIQYFASIAAVGGAS-KKDSS
ParentalKGTLEDQIIQANPALEAFGNAKTIRNDNSSRFGKFIRIHFGVSGKLASADIETYLLEKSRVTYQLKAERD
KGTLEDQIIQANPALEAFGNAKT.RNDNSSRFGKFIRIHFG.SGKL.SADIETYLLEKSRVT.QLKAER.
RetrocopyKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGTSGKLSSADIETYLLEKSRVTFQLKAERN
ParentalYHIFYQILSQQKPELLEMLLITNNPYDYAYISQGETTVASINDSEELMATDEAFDVLGFTQEEKNGIYKL
YHIFYQILS.QKPELL.MLLITNNPYDY.YISQGE.TVASINDSEELMATD.AFDVLGFT.EEK...YKL
RetrocopyYHIFYQILSNQKPELLDMLLITNNPYDYSYISQGEVTVASINDSEELMATDGAFDVLGFTPEEKMSVYKL
ParentalTGAIMHYGNMKFKQKQREEQAEPDGTEDVDKAAYLMGLNSADLIKGLCHPRVKVGNEWVTKGQSVQQVYY
TGAIMHYGNMKFKQKQREEQAEPDGTE..DK.AYLMGLNSADLIKGLCHPRVKVGNE.VTKGQSV.QVYY
RetrocopyTGAIMHYGNMKFKQKQREEQAEPDGTEAADKSAYLMGLNSADLIKGLCHPRVKVGNEYVTKGQSVDQVYY
ParentalSIGALAKSVYEKMFLWMVVRINQSLDTKQPRQYFIGVLDIAGFEIFDFNTFEQLCINYTNEKLQQFFNHH
.IGALAKSVYEKMF.WMVVRINQSLDTKQ.RQYFIGVLDIAGFEIFDFNTFEQLCIN.TNEKLQQFFNHH
RetrocopyAIGALAKSVYEKMFNWMVVRINQSLDTKQHRQYFIGVLDIAGFEIFDFNTFEQLCINFTNEKLQQFFNHH
ParentalMFVLEQEEYKKEGIVWEFIDFGMDLAACIELIEKPMGIMSILEEECMFPKASDSTFKAKLYDNHLGKSPN
MF.LEQEEYKKEGI.WEFIDFGMDL.ACI.LIEKP.GI.SILEEECMFPKASD.TFKAKLYDNHLGK...
RetrocopyMFILEQEEYKKEGIEWEFIDFGMDLQACIDLIEKPLGILSILEEECMFPKASDQTFKAKLYDNHLGKNKM
ParentalFQKPRVVKGKAEAHFSLIHYAGTVDYNISNWLEKNKDPLNETVVGLYQKSTLKLLSMLFMGYAGAESGQD
F.KPR..KGKAEAHF.L.HYAGTVDYNI..WL.KNKDPLNETVVGLYQKS.LKLLS.LF..YAGA..G..
RetrocopyFEKPRAAKGKAEAHFALVHYAGTVDYNIAGWLVKNKDPLNETVVGLYQKSSLKLLSLLFSNYAGADGGDK
ParentalGGGKGKGGKKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMENPLVMHQLRCNGVL
G.GKG...KKKGSSFQTVSALHRENLNKLMTNL..THPHFVRC.IPNE.KTPG.M.N.LVMHQLRCNGVL
RetrocopyGSGKG--AKKKGSSFQTVSALHRENLNKLMTNLKTTHPHFVRCLIPNERKTPGVMDNCLVMHQLRCNGVL
ParentalEGIRICRKGFPNRIQYGDFKQRYRILNPSAIPEGQFIDNKKASEKLLGSLDIDHEQYKLGHTKVFFKAGL
EGIRICRKGFPNR..YGDFKQRYRILN.SAIPEGQFID.KK..EKLLGSLDIDH.QYK.GHTKVFFKAGL
RetrocopyEGIRICRKGFPNRVLYGDFKQRYRILNASAIPEGQFIDCKKSTEKLLGSLDIDHTQYKFGHTKVFFKAGL
ParentalLGVLEEMRDDRLALILTGIQARSRGLLARIEFQKIVERRDALLVIQWNIRAFMGVKNWPWMKMFFKIKPL
LG.LEEMRD..L..I.T.IQA..RGLL.R.EF.K.VERRDAL.VIQWN.R.F.GVKNWPWMK.FFKIKPL
RetrocopyLGTLEEMRDEQLSRIITRIQANARGLLMRKEFIKLVERRDALMVIQWNLRSFLGVKNWPWMKLFFKIKPL
ParentalLKSAETEKEMANMKEEFTKLKEAYAKSEARKKELEEKMVTLLQEKNDLQLQVQSEQDNLSDAEERCEGLI
LKSAE.EKEMANMK.EF.KLKE...KSEAR.KELEEK.VTLLQEKNDL.LQ.QSEQD.L.DAEERCE.LI
RetrocopyLKSAESEKEMANMKDEFNKLKETLEKSEARRKELEEKIVTLLQEKNDLTLQIQSEQDTLTDAEERCEQLI
ParentalKSKIQLEAKVKELTERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLT
KSKIQLEAK.KE.TERLEDEEE.NA.LTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNL.
RetrocopyKSKIQLEAKLKEMTERLEDEEELNADLTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLM
ParentalEEMAALDEIIAKLTKEKKALQEAHQQTLDDLQSEEDKVNSLTKAKVKLEQQVDDLEGSLEQEKKVRMDLE
EEMA..DE.IAKLTKEK.ALQEAHQQTLDDLQSEEDK.N.LTKAK.KLEQQVDDLEGSLEQEKKVRMDLE
RetrocopyEEMASQDENIAKLTKEKRALQEAHQQTLDDLQSEEDKANTLTKAKAKLEQQVDDLEGSLEQEKKVRMDLE
ParentalRAKRKLEGDLKLTQENIMDLENDKQQLEEKLKKKDFEISQHLSKIEDEQAMSAQLQKKLKELQARIEELE
R.KRKLEGDLKL.QEN.MDLENDKQQLEEK.KKKDFE..Q..S..EDEQ..S.QLQKKLKE.QARIEE.E
RetrocopyRSKRKLEGDLKLIQENLMDLENDKQQLEEKIKKKDFEVTQITSRLEDEQIASVQLQKKLKESQARIEEVE
ParentalEELEAERAARAKVEKQRADLARELEEISERLEEAGGATAAQIELNKKREAEFQKMRRDLEEATLHHEATA
EEL.AERAARAKVEKQR.DL.RELE.ISERLEEAGGAT.AQ.ELNKKREAEFQK.RR.LEE.TL.HEATA
RetrocopyEELDAERAARAKVEKQRSDLSRELEDISERLEEAGGATSAQVELNKKREAEFQKLRRELEESTLQHEATA
ParentalATLRKKNADSVADLGEQIDNLQRVKQKLEKEKSELKLELDDVVSNMEQLAKAKSNLEKLCRTLEDQVSEY
ATLRKK.AD.VA.LGEQIDNLQRVKQKLEKEKSELKLELDD..SNME...K.K.N.EK.CRT.ED...EY
RetrocopyATLRKKHADTVAELGEQIDNLQRVKQKLEKEKSELKLELDDLCSNMENVVKTKANFEKMCRTMEDNMNEY
ParentalRTKSEEAQRSINDFTMQKAKFQTENGELTRQLEEKDSLVSQLTRAKLSYTQQIEDLKRQLEEEVKAKNAL
..K.EEAQR.IN..T.Q.AK..TENGEL.RQLEEKD.L.SQLTR.K.SY.QQ.EDL.RQLEEE.KAKNAL
RetrocopyKSKCEEAQRTINELTTQRAKLLTENGELGRQLEEKDCLISQLTRGKNSYNQQMEDLRRQLEEELKAKNAL
ParentalAHAVQSARHDCDLLREQFEEEQEAKAELQRSMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQD
AHAVQSARHDCDLLREQFEEEQEAKAELQR..SK.N.E...WRTKYETD.IQRTEELEEAKKKL.QRLQ.
RetrocopyAHAVQSARHDCDLLREQFEEEQEAKAELQRALSKSNTEISAWRTKYETDGIQRTEELEEAKKKLVQRLQE
ParentalAEEAVEAANAKCSSLEKTKHRLQGEIEDLMVDVERSNAAAAALDKKQRNFDKVLAEWKQKYEESQAELEG
AEEA.EA.NAKCSSLEKTKHRLQ.EIEDLM.D.ERSNAA.AALDKKQR.FDKVLAEWKQK.EESQ.ELE.
RetrocopyAEEAIEAVNAKCSSLEKTKHRLQNEIEDLMLDLERSNAASAALDKKQRTFDKVLAEWKQKFEESQCELEA
ParentalAQKDARSLSTELFKLKNSYEEALEHLETMKRENKNLQEEISDLTEQLGEGGKNIHELEKIRKQLEQEKAE
.QK.ARSLSTELFKL.N.YEE.L..LETMKRENKNLQEEISDLT.QLGEGG...HELEKIRK.LEQEK.E
RetrocopySQKEARSLSTELFKLRNAYEECLDQLETMKRENKNLQEEISDLTDQLGEGGRSAHELEKIRKELEQEKVE
ParentalIHTALEEAEGTLEHEEGKILRAQLEFNQVKADMERKMTEKDEEMEQAKRNHQRVTDTLQSSLEAEIRSRN
...ALEEAEG.LEHEE.KILRAQLEFNQVKADMERK..EKDEEM.QAKRN.QR....LQSSLE.E.RSRN
RetrocopyLQSALEEAEGSLEHEESKILRAQLEFNQVKADMERKLAEKDEEMDQAKRNYQRMVESLQSSLESETRSRN
ParentalEALRLKKKMEGDLNEMEIQLSQANRQAAEAQKQLKGVHAHMKDSQLQLDEALRANDDLKENIAIVERRNN
EA.R.KKKMEGDLNEMEIQLSQANRQAAEAQKQ.K...A..KD.QLQLD.....NDDLKENIA..ERRNN
RetrocopyEAMRVKKKMEGDLNEMEIQLSQANRQAAEAQKQVKTLQAFLKDTQLQLDDTQHGNDDLKENIALLERRNN
ParentalLMQAELDELRALVEQTERGRKLAEQELLDVSERVQLLHSQNTSLLNQKKKLESDTAQLQNEVEEAVQECR
L.QAEL.E.RA..EQTER.RKLAEQEL....ER.QLLHSQNTSL.NQKKK.E.D...LQ.EVEEA.QE.R
RetrocopyLIQAELEEVRAALEQTERSRKLAEQELTEATERMQLLHSQNTSLINQKKKHEADLLHLQCEVEEAIQENR
ParentalNAEEKAKKAVTDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQVQKLESRV
NAEEKAKKA.TDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQ.QKLE.R.
RetrocopyNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQLQKLETRI
ParentalRELENELEMEQRKSSDSVKGIRKYERRIKELTYQTEEDKKNLNRLQDLVDKLQLKVKSYKRAAEEAEEQS
.ELENELE.EQ.....S.KG.RKYERRIKELTYQTEED.KN..RLQDLVDKLQLK.KSYKRAAEEAEE..
RetrocopyKELENELEAEQKRGAESIKGVRKYERRIKELTYQTEEDRKNMARLQDLVDKLQLKAKSYKRAAEEAEEAA
ParentalNANLSKLRKLQHELEEAEERADIAESQVNKLRAKSRDSGAKKG
N.N..KLRKLQHELEEAEERADIAESQVNKLRAK.RD...KKG
RetrocopyNINMAKLRKLQHELEEAEERADIAESQVNKLRAKTRDGSSKKG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Oreochromis niloticus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Oreochromis niloticus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_onil_30 retrocopy.

TSS - click to see more details

Oreochromis niloticus was not studied using FANTOM5 data.

Lab - click to see more details

retro_onil_30 was not experimentally validated.

Retrocopy orthology:
Oreochromis niloticus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Danio rerio ENSDARG000000714301 retrocopy
retro_drer_2,
Gadus morhua ENSGMOG000000093871 retrocopy
retro_gmor_5,
Oreochromis niloticus ENSONIG00000008086 1 retrocopy
retro_onil_30 ,
Tetraodon nigroviridis ENSTNIG000000038381 retrocopy
retro_tnig_26,


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