RetrogeneDB ID: retro_ogar_3056

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873705.1:2134788..2136578(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IQCB1
• Ensembl ID: ENSOGAG00000004271
• Aliases: None
• Description: IQ motif containing B1 [Source:HGNC Symbol;Acc:28949]

Sequence

>retro_ogar_3056
ATGAAGCCAACAGGTACAGACCCAAGGATCTTAGCTTTAGCTGCTGAAGTTGCAAAAAGTCCTGAGCAAAATGTCCCTGT
TATACTGCTGAAGTTAAAAGAAATAATAAACACCATACCTTTAGGAAGGTAAGAGTTGAAGAAAATTAAACAAGATATAT
ATTGTTATGATCTTATTCAGTATTGCCTCTTGGTCCTCAGTCAAGATTGTTCTTGAATCCAGGGTGGTTGGACTACAATA
TCCCAGCTTACACAGATATTAAGCCATTGCTGTGTGGGCTTGGATCCAGGAAAAGATGCAGAGGAATTTTACAATGAGTT
ACTTCCATCAGCTGTAGAAAATTTTTTAGTACTAGGGAGATGATTACAAACATGTTTTATAAATACAGCTAAGGCTGAAG
AAAAAGATGAATCGCTACACTTCTTCCAAGTTGGGACTGATTCTCTCTTCTGGCTATTGGGAGGCCATGTTCAACTAATA
GAGAATGTACGGCAGAGTGATCATTTCTTACACCTACTTCAAGCTGACAGTGTCCAAATAGGATCTACAGTCATGACTAT
GCTGCAGAATATACTACAGATGAACAGTGGTGATTTACACAGAATTGAAAGAAAAACCCTGCATTCAATTTTAAATGAAA
TTGTTTTCAAGCTTTTATCAACTAGTCCAGTCATAAGAAGTACTGCTACAAAACTCCTACTGTTAATGGTGAAATCCCAT
CAAAATATTTTGATTTTACTGAGACTAAGTGCCTGCTACAAAAGACTCAGAAGTCTACTAAGTAAACAGGAAACTAAGAC
ATAATTTAGTCAAGAACTTAAACAGCTCATTGACCTTGTAAGCCCTAAGGCCTACCAGAAAGAAGAACAGCAGAAACTAC
ATCAAGCAGCTTGCTTGATTCAAGCTTATTGGAAGGGCTTTCAGACTAGAAAGAGATTAAAGAAGCTTACATCTGCTGTG
ACTGCTTCGCAGAGGAGTTTCAGATCTAAACGAACAAAGATAATGATGAAGATAAATAGGCAGAAAGAAGAAGAGGACCT
CAGATTATGATTACAGCTTCAGAGACAGAGAGCCATGAGACTTTCCCGAGAACTACATCTAAGTATGCTTGAAATAGTTC
ATCCAAGTCAGGTTGAAAAACACAACCAGGAAATAGAAGAGAAATCAGTATTGATTATCCAGAAGCATTGGAGAGGGTAC
AAGGAACAGAAAAATTTTCACCACCAGAGGCCATCCCTCATGGAGTATAAAGCAGCTGTCACACTTCAAAGAGCAGTGCT
TAAAATCCTAGTAAAATGTCGTAAGAAAAAGAAACCATTGATTCCTTGGCAAGGACTCCAAGAACTCACTGATGCATGTA
GAGTTAAACTGAAGCAACAAGTGGATGACTATGTCAAAAAACATCAAGGCTCTCAGTTGTCAGATCTGGCCAGCAGGGAG
CTCCATGCCCATGCTCAGGTATGACTGCAACACTACTTCATGAGCAGGGCCCTAGAAGAGAGAGCCCAGCAGCACAGAGA
GGTTTGATGGCTCAAATCAGCACCAAAATTGAACAACTAATGAAGGTACCAAGTCGGAAGGAGGCAGAAGGGAAAGAACC
TGAGCTCTCCCTAAGTAGATCCAGGCCTGTGGCAGCCAAGGCAAAAGAGGCCCATCTCACCACCCTGAAGCATATACAGG
CACCTTGGTGGAAGAAGTTTGGGGAAGAACCAGGAGATGAGATTGATGTTCCAAAGGATGAGCTTAGTGTAGAATTAGGA
ACTTTATTCATTGGTGGAATGAAACCACCT

Alignment

ORF - retro_ogar_3056 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.22 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MKPTGTDPRILALAAEVAKSPEQNVPVILLKLKEIINTIPLGSSELKKIKQDIYCYDLIQYCLLVLSQDC
          MKPTGTDPRILALAAEVAKSPEQNVPVILLKLKEIINTIPLG..ELKKIKQDIYCYDLIQYCLLVLSQDC
Retrocopy MKPTGTDPRILALAAEVAKSPEQNVPVILLKLKEIINTIPLGR*ELKKIKQDIYCYDLIQYCLLVLSQDC

Parental  SRIQGGWTTISQLTQILSHCCVGLDPGEDAEEFYNELLPSAVENFLVLGRRLQTCFINAAKAEEKDELLH
          S.IQGGWTTISQLTQILSHCCVGLDPG.DAEEFYNELLPSAVENFLVLGR.LQTCFIN.AKAEEKDE.LH
Retrocopy S*IQGGWTTISQLTQILSHCCVGLDPGKDAEEFYNELLPSAVENFLVLGR*LQTCFINTAKAEEKDESLH

Parental  FFQIVTDSLFWLLGGHVQLIQNVLYNGHFLHLLQTDN-QIDSTVMAMLQNILQLNSGDLLRIEGKTLHSI
          FFQ..TDSLFWLLGGHVQLI.NV....HFLHLLQ.D..QI.STVM.MLQNILQ.NSGDL.RIE.KTLHSI
Retrocopy FFQVGTDSLFWLLGGHVQLIENVRQSDHFLHLLQADSVQIGSTVMTMLQNILQMNSGDLHRIERKTLHSI

Parental  LNEIVFKLLSTSPVMRSTATKLLLLMVESHQDILILLRLSACYKGLRSLLKKQETKTEFSQELKQLIELL
          LNEIVFKLLSTSPV.RSTATKLLLLMV.SHQ.ILILLRLSACYK.LRSLL.KQETKT.FSQELKQLI.L.
Retrocopy LNEIVFKLLSTSPVIRSTATKLLLLMVKSHQNILILLRLSACYKRLRSLLSKQETKT*FSQELKQLIDLV

Parental  SPKAYQEEEEQQKLHQAACLIQAYWKGFQTRKRLKKLTSAVIALQRSFRRKKMSSLLFI-IGIRKKFQKN
          SPKAYQ..EEQQKLHQAACLIQAYWKGFQTRKRLKKLTSAV.A.QRSFR.K.......I.IG.RKK....
Retrocopy SPKAYQ-KEEQQKLHQAACLIQAYWKGFQTRKRLKKLTSAVTASQRSFRSKRTKIMMKI>IG-RKKKRTS

Parental  KHSKQYR-KQQNLRKHHSEYVVIVGVVFLGQVEKHNQEIEEKSALIIQKHWRGYKERKNFHHQRPSLMEY
          ......R..Q...R............V...QVEKHNQEIEEKS.LIIQKHWRGYKE.KNFHHQRPSLMEY
Retrocopy DYDYSFR<RQRAMRLSRELHLSMLEIVHPSQVEKHNQEIEEKSVLIIQKHWRGYKEQKNFHHQRPSLMEY

Parental  KAAVTLQRAVLKFLAKCRKKKKPFIPWQGLQELTDARRVELKQQVDDYVKKHPGSQLSDVASRELHAHAQ
          KAAVTLQRAVLK.L.KCRKKKKP.IPWQGLQELTDA.RV.LKQQVDDYVKKH.GSQLSD.ASRELHAHAQ
Retrocopy KAAVTLQRAVLKILVKCRKKKKPLIPWQGLQELTDACRVKLKQQVDDYVKKHQGSQLSDLASRELHAHAQ

Parental  ERLQHYFMGRALEERAQQHRE-ALMAQISTNIEQLMKAPSLKEAEGKEPELFLSRSRPVAAKAKEAHHTT
          ..LQHYFM.RALEERAQQHRE..LMAQIST.IEQLMK.PS.KEAEGKEPEL.LSRSRPVAAKAKEAH.TT
Retrocopy V*LQHYFMSRALEERAQQHRE<GLMAQISTKIEQLMKVPSRKEAEGKEPELSLSRSRPVAAKAKEAHLTT

Parental  LKHIQAPWWKKLGEEPGDEIDVPKDELSVELGTLFIGGTKPP
          LKHIQAPWWKK.GEEPGDEIDVPKDELSVELGTLFIGG.KPP
Retrocopy LKHIQAPWWKKFGEEPGDEIDVPKDELSVELGTLFIGGMKPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3056 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000173226	1 retrocopy	retro_hsap_3441,
Gorilla gorilla	ENSGGOG00000028124	1 retrocopy	retro_ggor_2324,
Otolemur garnettii	ENSOGAG00000004271	1 retrocopy	retro_ogar_3056 ,
Pongo abelii	ENSPPYG00000013494	1 retrocopy	retro_pabe_2845,
Pan troglodytes	ENSPTRG00000015281	1 retrocopy	retro_ptro_2333,