RetrogeneDB ID: retro_ogar_2157

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873597.1:8246513..8247419(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NEK7
• Ensembl ID: ENSOGAG00000004117
• Aliases: None
• Description: NIMA-related kinase 7 [Source:HGNC Symbol;Acc:13386]

Sequence

>retro_ogar_2157
ATGGATGAGCGATCTCAAGGAATGCAAGGGCCACCTGTTCCTCAGTTCCAGCCACAGAAGGCCTTACGACCTGATATGGG
CTATAACACATTAGCCAGCTTTCGAATAGAAAAGAAAATTGGTCGCGGACAATTTAGTGAAGTTTATAGAGCAGCCTGTC
TCTTGGATGGAGTACCAGTAGCTTTGAAAAAAGTACAGATATTTGATTTAATGGATGCCAAAGCACGTGCTGATTGCATC
AAAGAAATAGATCTCCTCAAGCAACTCAACCATCCAAATGTAATTAAATATTATGCATCATTCATTGAAGATAATGAACT
AAACATAGTTTTGGAATTAGCAGATGCTGGTGATCTATCCAGAATGATAAAGCATTTTAAGAAGCAAAAGAGGCTAATTC
CGGAAAGAGCTGTCTGGAAGTACTTTGTTCAGCTCTGCAGCGCGTTGGAACACATGCATTCTTGAAGAGTCATGCACAGA
GATATAAAACCAGCTAATGTGTTCATTACAGCCACTGGGGTGGTGAAACTTGGAGATCTTGGGCTTGGCCGGTTTTTCAG
CTCCAAAACCACAGCTGCACATTCTTTAGTGGGTACACCTTATTACATGTCTCCAGAGAGAATACATGAAAATGGATACA
ACTTCAAATCTGACATCTGGTCTCTTGGCTGTCTGCTGTATGAGATGGCTGCATTACAGAGTCCTTTCTATGGTGACAAA
ATGAATTTATACTCGCTGTGTAAGAAGATAGAACAGTGTGACTACCCACCTCTTCCTTCAGATCACTATTCAGAGGAACT
ACGACAGTTAGTGAATATGTGCATCAACCCAGATCCCGAGAAGCGACCAGACATCACCTACGTTTATGATGTGGCTAAGA
GAATGCACGCGTGCACCGCGAGCAGC

Alignment

ORF - retro_ogar_2157 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.68 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDEQSQGMQGPPVPQFQPQKALRPDMGYNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDL
          MDE.SQGMQGPPVPQFQPQKALRPDMGYNTLA.FRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDL
Retrocopy MDERSQGMQGPPVPQFQPQKALRPDMGYNTLASFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDL

Parental  MDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWK
          MDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPER.VWK
Retrocopy MDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERAVWK

Parental  YFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE
          YFVQLCSALEHMHS.RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE
Retrocopy YFVQLCSALEHMHS*RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE

Parental  NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPE
          NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPE
Retrocopy NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPE

Parental  KRPDITYVYDVAKRMHACTASS
          KRPDITYVYDVAKRMHACTASS
Retrocopy KRPDITYVYDVAKRMHACTASS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2157 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000004930	1 retrocopy	retro_cjac_2751,
Otolemur garnettii	ENSOGAG00000004117	1 retrocopy	retro_ogar_2157 ,