RetrogeneDB ID: | retro_cjac_2751 | ||
Retrocopy location | Organism: | Marmoset (Callithrix jacchus) | |
| Coordinates: | 6:107833687..107834316(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NEK7 | ||
| Ensembl ID: | ENSCJAG00000004930 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_cjac_2751
AATGTAATAAAATATTACACCTCATTCATTGAAGATAATGAACTAAACATAGTGTTGGAACTGGCAGATGCTGGCGACCT
ATCCAGAATGATAAAGCATTTTAAGAAGCAAAAGAGGCTAATTCCTGAAAGAACTGTCTGGAAGTACTTTGTTCAGCTTT
GCAGTACACTGGAACACATGCATACTCAAAGAGTCAGGCATAGAGATATAAAACCAGCCAATGTGTTCATTGCAGCCACT
GGGGTGGTAAAACATGGAGATCTTGGGCTTAGCCGTTTTTCAACTCAAAAACCACAGCTGCACATTCTTTAGTTGGTGCA
CCTTATTACATGTCTCCAGAGAGAATACATGAAAATGGATACAACTTCAAATCTGACATCTGGTCTCTCGGCTGTCTACT
ATATGAGATGGCTGCATTACAGAGTCCTGTCTATGGTGACAAAATGAATTTATACTCGCTGTGTAAGAAGATAGAAGAGT
GTGACTACTCACCTCTTCCTTCAGATCACTATTCAGAAGATCTATGACAGGTAGTTAATATGTGCACCAACCCAGATCCA
GAGAAGCGACCAGGCGTCACCTATGTTTGTGACGTAGCAAAGAGGATGCATGCCTGCACTGCAAGCAGC
ORF - retro_cjac_2751 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 89.67 % |
| Parental protein coverage: | 69.74 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | NVIKYYASFIEDNELNIVLELADAGDLSRMIKKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRD |
| NVIKYY.SFIEDNELNIVLELADAGDLSRMIK.HFKKQKRLIPERTVWKYFVQLCS.LEHMH..RV.HRD | |
| Retrocopy | NVIKYYTSFIEDNELNIVLELADAGDLSRMIK-HFKKQKRLIPERTVWKYFVQLCSTLEHMHTQRVRHRD |
| Parental | IKPANVFITATGVVKLGDLGLGRF-FSSKTTAAHSLAVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEM |
| IKPANVFI.ATGVVK.GDLGL.RF.F.SKTTAAHSL.VG.PYYMSPERIHENGYNFKSDIWSLGCLLYEM | |
| Retrocopy | IKPANVFIAATGVVKHGDLGLSRF<FNSKTTAAHSL-VGAPYYMSPERIHENGYNFKSDIWSLGCLLYEM |
| Parental | AALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT |
| AALQSP.YGDKMNLYSLCKKIE.CDY.PLPSDHYSE.L.Q.VNMC.NPDPEKRP.VTYV.DVAKRMHACT | |
| Retrocopy | AALQSPVYGDKMNLYSLCKKIEECDYSPLPSDHYSEDL*QVVNMCTNPDPEKRPGVTYVCDVAKRMHACT |
| Parental | ASS |
| ASS | |
| Retrocopy | ASS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP051959_colon | 0 .11 RPM | 33 .24 RPM |
| SRP051959_heart | 0 .23 RPM | 107 .17 RPM |
| SRP051959_kidney | 0 .07 RPM | 43 .75 RPM |
| SRP051959_liver | 0 .02 RPM | 20 .73 RPM |
| SRP051959_lung | 0 .13 RPM | 65 .85 RPM |
| SRP051959_lymph_node | 0 .18 RPM | 52 .24 RPM |
| SRP051959_skeletal_muscle | 0 .20 RPM | 90 .08 RPM |
| SRP051959_spleen | 0 .02 RPM | 58 .45 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_2751 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_2751 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_2751 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000004930 | 1 retrocopy |
retro_cjac_2751 ,
|
| Otolemur garnettii | ENSOGAG00000004117 | 1 retrocopy |