RetrogeneDB ID: retro_ogar_2154

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873597.1:859819..860225(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000024901
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NDUFB7
• Ensembl ID: ENSOGAG00000009615
• Aliases: None
• Description: NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa [Source:HGNC Symbol;Acc:7702]

Sequence

>retro_ogar_2154
GGGGCCCACCTGACTCACAGTTACCTGGGCAATTCCTCTGTGGAGCCTGACCCCCTGCGGATGCCCACCTTCCCTCCCAA
CTACAGCTTCTCAGAGCACAAGGAGCATGAGATGGTGGCCACACAGCAGGAGATGAGTGATGCACAGCTGATGCTCCAGC
AGCAGGACTACTGTGCCCACTACCTCATCCAGCTGCTCAATGCAAACGTGACAGATTCCCTAACTTCCTGGCCTGCAAAC
ATGAACAGCATGACTGGACTACTGTGAACACTTTGACTATGTGAAACACATGAAGGAGTTTGAACCGGAGAGGCAGCTGC
TCCAGCAGAAGAAGCAGCGGGAGCAGAGGGAGGCAGAGGCTGCCAAAAGCAAGGGGACCAGAGAGGTGGCTCCTGAGGTG
GCTCTA

Alignment

ORF - retro_ogar_2154 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.91 %
• Parental protein coverage: 99.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GAHLARRYLGDSSVEPDPLRMPTFPPDYGFPERKEREMVATQQEMSDAQLTLQQRDYCAHYLIRLL-KCK
          GAHL...YLG.SSVEPDPLRMPTFPP.Y.F.E.KE.EMVATQQEMSDAQL.LQQ.DYCAHYLI.LL..CK
Retrocopy GAHLTHSYLGNSSVEPDPLRMPTFPPNYSFSEHKEHEMVATQQEMSDAQLMLQQQDYCAHYLIQLL<QCK

Parental  RDSFPNFLACKHEQHDW-DYCEHLDYVKRMKEFERERRLLQRKKRREKREAEAAQGKGTGEVAPEVAL
          RD.FPNFLACKHEQHDW.DYCEH.DYVK.MKEFE.ER.LL.............A..KGT.EVAPEVAL
Retrocopy RDRFPNFLACKHEQHDW<DYCEHFDYVKHMKEFEPERQLLXXXXXXXXXXXXXAKSKGTREVAPEVAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2154 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000011470	1 retrocopy	retro_amel_1288,
Canis familiaris	ENSCAFG00000016258	1 retrocopy	retro_cfam_1718,
Dipodomys ordii	ENSDORG00000015213	1 retrocopy	retro_dord_6,
Mus musculus	ENSMUSG00000033938	1 retrocopy	retro_mmus_2539,
Otolemur garnettii	ENSOGAG00000009615	1 retrocopy	retro_ogar_2154 ,