RetrogeneDB ID: retro_ogar_2084

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873589.1:9657889..9658276(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000006935
• Aliases: None
• Description: None

Sequence

>retro_ogar_2084
GGTCTGGTCACCAGCAACCTAAATCTCAAACCTGGGGAGTGCCTCAGAGTATGGGGTGAGGTGGCCCCTGATGCCAAGAG
CTTTGTGCTGAACCTGAGCAAAGACAGCAACAACCTGTGCCTGCATTTCAACCCCCGCTTTGATGCCCATGGGGATGCCA
ATACTATCAGCAAGGACAGCAGGGCCTGGGGGGCTTAGCAGCAGGAGGTTGCCTTTCCCTTCTAGCCTGGAAGTGTCATG
GAGGTATGCATCAGTTTTGACCAAGCAGACCTGACTGTCAGGCTGCTAGATGGTTACACGTTCAAGTTCCCTAACCCCTT
CAACCTGGAGCCCATAAACTACATGGCAGCTGATGGTGACTTTAAGATCAAGTGTGTGGCCTTTGAT

Alignment

ORF - retro_ogar_2084 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.36 %
• Parental protein coverage: 97.78 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFDAHGDANTIVCNSKDGGAWGAEQ
          GLV.SNLNLKPGECLRV.GEVAPDAKSFVLNL.KDSNNLCLHFNPRFDAHGDANTI...SKD..AWGA.Q
Retrocopy GLVTSNLNLKPGECLRVWGEVAPDAKSFVLNLSKDSNNLCLHFNPRFDAHGDANTI---SKDSRAWGA*Q

Parental  REAAFPFQPGSVVEVCISFDQADLTVKLPDGYTFKFPNRLNLEAINYMAADGDFKIKCVAFD
          .E.AFPF.PGSV.EVCISFDQADLTV.L.DGYTFKFPN..NLE.INYMAADGDFKIKCVAFD
Retrocopy QEVAFPF*PGSVMEVCISFDQADLTVRLLDGYTFKFPNPFNLEPINYMAADGDFKIKCVAFD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2084 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001487	1 retrocopy	retro_cfam_141,
Otolemur garnettii	ENSOGAG00000006935	5 retrocopies	retro_ogar_11, retro_ogar_1178, retro_ogar_2084 , retro_ogar_467, retro_ogar_64,
Tursiops truncatus	ENSTTRG00000004798	1 retrocopy	retro_ttru_1501,