RetrogeneDB ID: retro_ogar_1801

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873566.1:13783147..13785010(+)
• Located in intron of: ENSOGAG00000009161

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000011123
• Aliases: None
• Description: None

Sequence

>retro_ogar_1801
ATGGAGGAGTCGGAACCTGAGCGGAAGCGGGCTCGCCCCGACGAGGCAACTGCTGGAGGAAGCCGCTCCGAGGCAGAAGA
TGATGACGAAGCCTATGTACCTTATGTGCCATTACGACAAAGGCGGCAACTACTGCTTCAGAAGCTTCTGCAACGAAGAC
GCAAGGGAGCTGCAGAGGAGGAGCAGCTTGACAGTGGCAGTGAGCCCCAAGGAGATGAGGACGACATCCCACTGGGCCCT
CAGTCCAACGTCAGCCTCTTGGATCAGCACCAACACCTCAAAGAGAAGGCTGAAGCCCGAAAGGAGTCAGCCAAGGAGAA
ACAGCTGAAAGAAGAAGAGAAAATCCTTGAGAGTGTGGCTGAGGGCCGAGCTTTGATGTCAGTGAAGGAGATGGCTAAAG
GCATCACTTATGATGACCCAATCAAAACCAGCTGGACACCTCCCCGTTACGTCCTGAATATGTCTGAAGAGCGTCATGAG
CGTGTACGGAAGAAATACCACATATTGGTGGAGGGAGATGGTATCCCACCACCCATCAAAAGCTTCAAGGAAATGAAGTT
TCCTGCAGCCATCTTGAGGGGCTTGAAGAAGAAAGGCATTCACCACCCAACGCCCATTCAGATCCAAGGCATCCCAACCA
TTCTATCTGGCCGTGACATGATTGGCATTGCCTTCACAGGTTCAGGGAAGACGCTGGTGTTTACACTGCCTGTCATCATG
TTCTGCCTAGAGCAGGAGAAAAGGTTACCCTTCTCCAAGCGTGAAGGGCCCTACGGACTCATCATTTGCCCCTCACGGGA
GCTAGCCCGCCAGACCCATGGCATCCTGGAATACTACTGCCGCCTGCTGCAGGAAGATAGCTCACCGCTCTTGCGCTGTG
CTCTCTGCATTGGGGGCATGTCTGTCAAAGAGCAGATGGAGACCATCCGACATGGTGTACACATGATGGTGGCCACCCCT
GGGCGCCTCATGGATCTGCTGCAAAAGAAGATGGTCAGTCTAGACATCTGTCGCTACCTGGCCCTCGATGAGGCTGACCG
CATGATTGACATGGGCTTTGAGGGAGATATCCGCACCATTTTCTCTTACTTCAAGGGCCAGCGGCAGACTCTACTCTTTA
GTGCCACCATGCCCAAGAAGATTCAGAACTTTGCCAAGAGTGCCCTCGTAAAGCCTGTCACTATCAATGTGGGTCGTGCT
GGGGCGGCCAGCCTGGATGTTATACAGGAGGTAGAATATGTGAAGGAGGAGGCTAAGATGGTGTACCTGCTCGAGTGCCT
GCAAAAGACACCTCCACCTGTGCTCATCTTTGCAGAGAAGAAAGCAGACGTGGATGCCATCCATGAGTACCTGCTGCTCA
AGGGGGTTGAGGCCGTGGCCATCCATGGGGGCAAAGATCAGGAGGAAAGAACCAAGGCCATTGAGGCCTTCCGAGAAGGC
AAGAAGGATGTCTTAGTGGCCACAGATGTAGCTTCCAAGGGCCTGGACTTTCCTGCCATCCAGCATGTGATCAATTATGA
CATGCCCGAGGAGATTGAGAACTATGTGCATCGGATTGGCCGCACTGGACGCTCAGGAAACACAGGCATTGCCACCACCT
TCATCAACAAGGCCTGTGATGAGTCAGTCCTGATGGATCTCAAAGCCCTGCTGCTAGAAGCCAAGCAGAAAGTGCCACCT
GTTTTGCAAGTGCTGCACTGTGGGGATGAATCCATGCTGGACATTGGAGGAGAGCGTGGCTGTGCCTTCTGCGGGGGCCT
GGGCCATCGGATCACTGACTGCCCCAAACTCGAGGCTATGCAAACCAAGCAGGTCAGCAACATTGGCCGCAAGGACTACC
TGGCCCACAGCTCCATGGACTTC

Alignment

ORF - retro_ogar_1801 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.2 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEESEPERKRTRTDEATAGGSRSEAEDEDDEAYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQPDSGSEP
          MEESEPERKR.R.DEATAGGSRSEAED.DDEAYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQ.DSGSEP
Retrocopy MEESEPERKRARPDEATAGGSRSEAED-DDEAYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQLDSGSEP

Parental  QGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDD
          QGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDD
Retrocopy QGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDD

Parental  PIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQ
          PIKTSWTPPRYVL.MSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQ
Retrocopy PIKTSWTPPRYVLNMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQ

Parental  GIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY
          GIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY
Retrocopy GIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY

Parental  CRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMI
          CRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMI
Retrocopy CRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMI

Parental  DMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAK
          DMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAK
Retrocopy DMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAK

Parental  MVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD
          MVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD
Retrocopy MVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD

Parental  VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP
          VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP
Retrocopy VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP

Parental  PVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF
          PVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF
Retrocopy PVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1801 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000008770	1 retrocopy	retro_cpor_1521,
Loxodonta africana	ENSLAFG00000026418	1 retrocopy	retro_lafr_689,
Macropus eugenii	ENSMEUG00000014375	1 retrocopy	retro_meug_2040,
Otolemur garnettii	ENSOGAG00000011123	1 retrocopy	retro_ogar_1801 ,
Rattus norvegicus	ENSRNOG00000012771	1 retrocopy	retro_rnor_2396,
Sarcophilus harrisii	ENSSHAG00000014005	1 retrocopy	retro_shar_53,