RetrogeneDB ID: retro_ogar_1761

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873564.1:11372017..11372498(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OIP5
• Ensembl ID: ENSOGAG00000033746
• Aliases: None
• Description: Opa interacting protein 5 [Source:HGNC Symbol;Acc:20300]

Sequence

>retro_ogar_1761
CCTGGGGGTGACTATAATGATGAAGCTAAGAGGGCAACAGATGAATCTTCCTTTATGAACTCCATGTAATGGACATGCAG
GCAGTGAGGGGGTAGTTGCCTTTTGGCCCTGTGAGGCTGCAGGCAAAGTCCCTGCAGCTCTCCTGCAGCAGCCCTATGGG
CTGAAGCCCAAGAGGCATACTGTGTGCCAGTGCCCTCCAGGCCAGGCAGTGGTTGCTGACTCTGTGCACCTTGCCTGGGA
CCTGTCCCAGTCCCTTGGGGCTGTGATCTTCTCCAGAGTTACAAATAACATCCTTTTGAAAGAGCCTTCCTAGTTGTCAT
TAAGGTTCACTCAAAGGCAGCACTTGCAACTTTTATTCTGTGGTCTCTGTGGGATGCCCATTGGTTTCCTTCTATATTCT
GCCTGTGCTACCCTGGCTGCCTCCACAGGTCACTTCTGCCTTTCCAGTGACAAAATAATGTGCTATCTCCTAAAGCAAAA
A

Alignment

ORF - retro_ogar_1761 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.07 %
• Parental protein coverage: 75.35 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  PGGDCNNEARSATEESSFMTSMEW-DTQVVKGSSPLGPARLEAEE-PAPLPQLPGWLEPERCAVFQCAQC
          PGGD.N.EA..AT.ESSFM.SM.W.D.Q.V.G..P.GP.RL.A...PA.L.Q.P..L.P.R..V.QC...
Retrocopy PGGDYNDEAKRATDESSFMNSM*W<DMQAVRG*LPFGPVRLQAKS<PAALLQQPYGLKPKRHTVCQCPPG

Parental  HAVFADSVHLAWDLSQSLGAVVFSRVTNNVLLKEP-FLVGIE-GSLKGSTYN-LLFCGPCGIPIGFHLYS
          .AV.ADSVHLAWDLSQSLGAV.FSRVTNN.LLKEP.FLV.I..GSLKGST.N.LLFCG.CG.PIGF.LYS
Retrocopy QAVVADSVHLAWDLSQSLGAVIFSRVTNNILLKEP<FLVVIK<GSLKGSTCN<LLFCGLCGMPIGFLLYS

Parental  THAALAALRGHFCLCSEKMVCYLLKTK
          ..A.LAA..GHFCL.S.K..CYLLK.K
Retrocopy ACATLAASTGHFCLSSDKIMCYLLKQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1761 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016777	1 retrocopy	retro_amel_242,
Bos taurus	ENSBTAG00000010766	1 retrocopy	retro_btau_1700,
Felis catus	ENSFCAG00000030520	1 retrocopy	retro_fcat_1387,
Myotis lucifugus	ENSMLUG00000009765	2 retrocopies	retro_mluc_2106, retro_mluc_2341,
Mustela putorius furo	ENSMPUG00000008828	2 retrocopies	retro_mputfur_1518, retro_mputfur_1534,
Otolemur garnettii	ENSOGAG00000033746	1 retrocopy	retro_ogar_1761 ,
Sorex araneus	ENSSARG00000009593	2 retrocopies	retro_sara_351, retro_sara_629,