RetrogeneDB ID: retro_nleu_845

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397274.1:31250044..31250945(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACOT7
• Ensembl ID: ENSNLEG00000010371
• Aliases: None
• Description: acyl-CoA thioesterase 7 [Source:HGNC Symbol;Acc:24157]

Sequence

>retro_nleu_845
GCCATCCAGATCTGCCGGATCATGCGGCCAGATGACGCCATGTGGCCCGCAATGTCTAGGCAGGACCATCCTGAAGATGA
TCGAGGAGGCGGGCGCCATCATCAGCACCCGGCATTGCAACCCCCAGAACGGGGAGCGCTGTGTGGCTGCTCTGGCTCGG
GTTGAGTGAACCGACTTTCTGTGGCCCATGTGCATCGGTGAGGTGGCCCACGTCAGCGCGGAGATCACCTACACCTCCAA
GCACTCTGTGGAGATGCAGGTCAACGTGATGTCCGAAAACATCCTCACAGGTGCCAAAAAGCTGACCAATAAGGCCACCC
TCTGGTATGCGCCCCTGTCGCTGACGAACGTGGACAAGGTCCTCGAAGTGCCTCCTGTTGTGTATTTCCGGCAGGAGCAG
GAGGAGGAGGGCCAGAAGCGGTACGAAACCCAGAAGCTGGAGCGCATGGAGACCAACTGGAGGAACGGGGACATCCTGCA
GCCAGTCCTCAACCCAGAGCCGACCACTGTCAGCTACAGCCAGTCCAGCTTGATCCACCTGGTGGGGCCTTCATACTGTA
CCCTGCACAGCTTCCTGCATGAAGGCGTGACCATGAAGGTGATGGATGAGGTCACCGGGATCTTGGCTGCACGCCACTGC
AAGACCAACCTCGTCACAGCTTCCATGGAGGCCATTAATTTTCACGACAAGATCAGAAAAGGCTACATCAAGACCATCTC
GGGACGCATGACCTTCACGAGCAATAAGTCCGTAGAGATCGAGGTCTTGGTGGACGCCGACTGTGTTGTGGACAGCTCTC
AGAAGCACTACCGGGCCGCCAGTGTCTTCACCTAAGTGTCGCTGAGCCAGGAAGGCAGGTCGCTGCCCGTGTCCCAGCTC
GTGCCCAAGACCCAGGAGGAG

Alignment

ORF - retro_nleu_845 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.53 %
• Parental protein coverage: 91.79 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  AFQLSRIMRPDDA-NVAGNVHGG-TILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGE
          A.Q..RIMRPDDA..VA.NV..G.TILKMIEEAGAIISTRHCN.QNGERCVAALARVE.TDFL.PMCIGE
Retrocopy AIQICRIMRPDDA<HVARNV*AG<TILKMIEEAGAIISTRHCNPQNGERCVAALARVE*TDFLWPMCIGE

Parental  VAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEG
          VAHVSAEITYTSKHSVE.QVNVMSENILTGAKKLTNKATLWY.PLSL.NVDKVLEVPPVVY.RQEQEEEG
Retrocopy VAHVSAEITYTSKHSVEMQVNVMSENILTGAKKLTNKATLWYAPLSLTNVDKVLEVPPVVYFRQEQEEEG

Parental  RKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGI
          .KRYE.QKLERMET.WRNGDI.QPVLNPEP.TVSYSQSSLIHLVGPS.CTLH.F.H.GVTMK.MDEV.GI
Retrocopy QKRYETQKLERMETNWRNGDILQPVLNPEPTTVSYSQSSLIHLVGPSYCTLHSFLHEGVTMKVMDEVTGI

Parental  VAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFF
          .AARHCKTN.VTAS..AINFHDKIRKG...TISGRMTFTSNKS.EIEVLVDAD.VVDSSQK.YRAAS..F
Retrocopy LAARHCKTNLVTASMEAINFHDKIRKGYIKTISGRMTFTSNKSVEIEVLVDADCVVDSSQKHYRAASV-F

Parental  TYVSLSQEGRSLPVPQLVPETEDE
          T.VSLSQEGRSLPV.QLVP.T..E
Retrocopy T*VSLSQEGRSLPVSQLVPKTQEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_845 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000000157	2 retrocopies	retro_cjac_1229, retro_cjac_457,
Homo sapiens	ENSG00000097021	1 retrocopy	retro_hsap_3034,
Mustela putorius furo	ENSMPUG00000006882	1 retrocopy	retro_mputfur_177,
Nomascus leucogenys	ENSNLEG00000010371	1 retrocopy	retro_nleu_845 ,
Pongo abelii	ENSPPYG00000001945	1 retrocopy	retro_pabe_2513,
Pan troglodytes	ENSPTRG00000000084	1 retrocopy	retro_ptro_2047,