RetrogeneDB ID: retro_nleu_44

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397328.1:586166..586502(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000018579
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSNLEG00000000672
• Aliases: None
• Description: None

Sequence

>retro_nleu_44
ATGGCAGCTGCGTTGGCTCAGCTTGGTCTGCGGCCTGTCAAAGAGGTTCGGGTTCAATTCTGTCCCTTTGAGAAAAACGT
GGAACCGACGAGGACCTTCCTCCAGGCGGTGAGCAGTGAGAAGATCCGCTCCACTAATCTCAACTGCTCAGTGATTGCGG
ACGTGAGGCATGACGGCTCTGAGCCCTGCAGGGACGTGCTGTTCGGAGACGGGCATCGCCTGATTATGCGCGGCGCTCAT
CTCACCACTCTGGAAATGCTCACCGCCTTCGCCTCCCACATCCGGGCCAGGGACGCGGGGGGCAGCGGGGACAAGCCGGG
CGCTGATACTGGTCGC

Alignment

ORF - retro_nleu_44 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.54 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAALARLGLRPVKEVRVQFCPFEKNVEPTRTFLQAVSSEKVRSTNLNCSVIADVRHDGSEPCVDVLFGD
          MAAALA.LGLRPVKEVRVQFCPFEKNVEPTRTFLQAVSSEK.RSTNLNCSVIADVRHDGSEPC.DVLFGD
Retrocopy MAAALAQLGLRPVKEVRVQFCPFEKNVEPTRTFLQAVSSEKIRSTNLNCSVIADVRHDGSEPCRDVLFGD

Parental  GHRLIMRGAHLTALEMLTAFASHIRARDAAGSGDKPGADTGR
          GHRLIMRGAHLT.LEMLTAFASHIRARDA.GSGDKPGADTGR
Retrocopy GHRLIMRGAHLTTLEMLTAFASHIRARDAGGSGDKPGADTGR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_44 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000016599	3 retrocopies	retro_btau_1132, retro_btau_1528, retro_btau_799,
Nomascus leucogenys	ENSNLEG00000000672	1 retrocopy	retro_nleu_44 ,
Oryctolagus cuniculus	ENSOCUG00000015342	1 retrocopy	retro_ocun_372,
Pan troglodytes	ENSPTRG00000033835	1 retrocopy	retro_ptro_90,
Tarsius syrichta	ENSTSYG00000002278	2 retrocopies	retro_tsyr_1300, retro_tsyr_1840,