RetrogeneDB ID: retro_nleu_187

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397261.1:53553945..53554679(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000017135
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: METTL15
• Ensembl ID: ENSNLEG00000017865
• Aliases: None
• Description: None

Sequence

>retro_nleu_187
ATGCTTCAGTATCCTTATTTTTGTAGAATGTATAAAGAATGTCTTTCATGTTGGTTGAAATCTGGCATACCTAATTTAGG
TATCTGGCCAAAAAGAATACATACGACAGCAGAAAAATATGAAGAATATGAAGCCCAGAAGCAAACAGACCAAACTCAAG
CCCAGGAGTTACATAGATCTCAAGATAGAGATTTTGAAACGATGGCTAAATTACACATTCCGGTAACGGTGGATGAAGTT
GTTCCTTATTTGTCACCACAAAAAGGACAGATTTTTCTAGATATGACATTCGGTTCGGGAGGGCACACAAAAGCCATTCT
ACAGAAGGAGTCAGATATTGTTCTGTATGCCTTGGACAGAGACCCGACAGCTTACGTATTAGCTGAACATCTTTCAGAGT
TGTATCCTAAACAAATCCGAGCTATGCTGGGCCAGTTCAGCCAGGCAGAAGGTTGTTAATGAAAGCTGGAGTGCAGCCAG
GGACTTTTGATGGAGTTCTTATGGATCTTGGGTGTTCCTCTATGCAACTCGATACTCCTGAAAAGTATTTTTCCCTTCAG
AAAGACGGCCCCTTGGACATGAGGATGGATGGTAGCAGGTACCCTGACACGCCCACTGCTGCTGATGTTGTGAATGCTTT
AGATCAACAGGCACTTGCATCTATCCTGAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTC
AGGCACGCAGCATC

Alignment

ORF - retro_nleu_187 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.4 %
• Parental protein coverage: 60.2 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MLRYAYFCRMCKECLSCWLESGIPNLGVWPKRIHTTAGKYREYEAREQTYQTQAQELHRSQDRDFETMAK
          ML.Y.YFCRM.KECLSCWL.SGIPNLG.WPKRIHTTA.KY.EYEA..QT.QTQAQELHRSQDRDFETMAK
Retrocopy MLQYPYFCRMYKECLSCWLKSGIPNLGIWPKRIHTTAEKYEEYEAQKQTDQTQAQELHRSQDRDFETMAK

Parental  LHIPVMVDEVVHCLSPRKGQIFLDMTFGSGGHTKAXXXXXXXXXLYALDRDPTAYALAEHLSELYPKQIR
          LHIPV.VDEVV..LSP.KGQIFLDMTFGSGGHTKA.........LYALDRDPTAY.LAEHLSELYPKQIR
Retrocopy LHIPVTVDEVVPYLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYVLAEHLSELYPKQIR

Parental  AMLGQFSQAEA-LLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAAD
          AMLGQFSQAE..LLMKAGVQPGTFDGVLMDLGCSSMQLDTPE..FSL.KDGPLDMRMDG.RYPD.PTAAD
Retrocopy AMLGQFSQAEG<LLMKAGVQPGTFDGVLMDLGCSSMQLDTPEKYFSLQKDGPLDMRMDGSRYPDTPTAAD

Parental  VVNALDQQALASILRTYGEEKHAKKIASAIVQARSI
          VVNALDQQALASILRTYGEEKHAKKIASAIVQARSI
Retrocopy VVNALDQQALASILRTYGEEKHAKKIASAIVQARSI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_187 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006142	2 retrocopies	retro_cjac_3301, retro_cjac_4047,
Homo sapiens	ENSG00000169519	2 retrocopies	retro_hsap_1123, retro_hsap_4656,
Macaca mulatta	ENSMMUG00000013616	1 retrocopy	retro_mmul_870,
Nomascus leucogenys	ENSNLEG00000017865	2 retrocopies	retro_nleu_1093, retro_nleu_187 ,
Oryctolagus cuniculus	ENSOCUG00000014291	1 retrocopy	retro_ocun_536,
Pongo abelii	ENSPPYG00000003399	1 retrocopy	retro_pabe_3617,
Pan troglodytes	ENSPTRG00000003461	1 retrocopy	retro_ptro_680,