RetrogeneDB ID: retro_mputfur_971

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896982.1:7842597..7843150(-)
• Located in intron of: ENSMPUG00000005217

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ITPA
• Ensembl ID: ENSMPUG00000008868
• Aliases: None
• Description: inosine triphosphatase (nucleoside triphosphate pyrophosphatase) [Source:HGNC Symbol;Acc:6176]

Sequence

>retro_mputfur_971
AAGCTGGAGGAGGTCATTCAGATTCTAGGAAATAGTTTCCATGATCTTGGGTGGCACAGAAAATTGACCTGCCAGAGTTC
CAGAGAGAGCCTGAGGAGATTTGTGTACAGAAGTGTCAGGAAACAGCTCACCAGGTACAGGAGCTTGTACTGGTGGAGGA
CACCTAGCTGCTTCAATTCCTTTGGGAGCCCCCTGGCCCCTACATAAAGTGGTTTCTGGAGAAGTTAAAGCCTGAAGGTC
TCTGCCAGCTCCTGCTGGGTTTGAGGACAGACTTGCCTGTGTGCTCTACACATTTGTGCTCAGCACCAAGGACCCCAGCA
AGCCAGTGCCCCTATTCAGGGACCAGATCGTGGTGCTCCAAGGCCTCCAGAACTTTGGCTGAGACTCCTGCTTTCAGCCT
GATGGATACAAGCAGACATATGCAAAGATGCCCAGAGCTGAGAAGAATGCCGCCTTCCATCACTTCCAGGCCCTGCCTGA
GCTACAAAAACACTTTTGCAGCTTGACTTTTCTGGTGGACATTGATGATTGCCCTGGCTGGGGATCTGAGGAA

Alignment

ORF - retro_mputfur_971 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.54 %
• Parental protein coverage: 90.91 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KLEEVIQILGDKS-PCTLVAQKIDLPEYQGEPDEISIQKCQEAARQVQGPVLVEDTCLCFNALGGLPGPY
          KLEEVIQILG....P...VAQKIDLPE.Q.EP.EI..QKCQE.A.QVQ..VLVEDT.L....L...PGPY
Retrocopy KLEEVIQILGNSF<P*SWVAQKIDLPEFQREPEEICVQKCQETAHQVQELVLVEDT*L-LQFLWEPPGPY

Parental  IKWFLEKLKPEGLYQLL-AGFDDKSAYALCTFALSTGDPSEPVRLFRGRTSGQIVAPRGCRDFGWDPCFQ
          IKWFLEKLKPEGL.QLL.AGF.D..A..L.TF.LST.DPS.PV.LFR.....QIV...G...FG.D.CFQ
Retrocopy IKWFLEKLKPEGLCQLL<AGFEDRLACVLYTFVLSTKDPSKPVPLFR----DQIVVLQGLQNFG*DSCFQ

Parental  PDGYEQTYAEMPKAEKNTISHRFRALLELQKYLGSLDAPVVGDDRPGRGTGE
          PDGY.QTYA.MP.AEKN...H.F.AL.ELQK...SL...V..DD.PG.G..E
Retrocopy PDGYKQTYAKMPRAEKNAAFHHFQALPELQKHFCSLTFLVDIDDCPGWGSEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_971 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_971 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000011021	1 retrocopy	retro_amel_476,
Canis familiaris	ENSCAFG00000031613	1 retrocopy	retro_cfam_1841,
Felis catus	ENSFCAG00000013414	1 retrocopy	retro_fcat_1776,
Microcebus murinus	ENSMICG00000013833	1 retrocopy	retro_mmur_1207,
Mustela putorius furo	ENSMPUG00000008868	1 retrocopy	retro_mputfur_971 ,
Mus musculus	ENSMUSG00000074797	3 retrocopies	retro_mmus_2063, retro_mmus_3369, retro_mmus_3604,