RetrogeneDB ID: retro_mputfur_878

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896963.1:8041655..8042255(-)
• Located in intron of: ENSMPUG00000017346

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BSG
• Ensembl ID: ENSMPUG00000009950
• Aliases: None
• Description: basigin (Ok blood group) [Source:HGNC Symbol;Acc:1116]

Sequence

>retro_mputfur_878
CTGGAGAAGAAGTATGAGGTGGACTTGGATGACCACTCCAGTGAGTATGCATGCATCTTCCTCCCAGAGCATTCAGTCAA
GACCAGCATTGAAATGAAGGGGCTCCCTAACATCAAGGCCACGAATAATTCAGAGCATGCCACTGAGGGGGAGATAGTCA
TGCTGGGCTGCAAGTTGGACTCCTAATCGCTGGTTAGCAACTAGGTGTGGTAAAATTAGTAGCTCCAGGGACCAGGTCCT
CAGTAACTGCTCACAGAGTAAGTCCTTCGTGGTGGCCTTGGAGACCAAGATGGAGCTGCATATCTCGAATCTGGATGTTG
AGGCAGACCCTGGCAAATATGCCTGCAATGGCACCAACTTGGAGGGCACCACCAGCCAGACCATCATTGTGCCATATGTG
AAAAACCACTTTGCCATGCTTTTGCCCTTCCTGGGTGTAGTAGTTGAGGTGCTGGTGCTGATCACAAGTTATTTTCATAT
ATGAGAAACGGCAGAAGCTGGACAATGTACTGTAATGATGATGGCATGGGTTCTGTTCCTCTGAAGAGCACTGGGCATGT
GAACAATAAAGGCAAGAACATTTGCTTGAGGAACTCCAAC

Alignment

ORF - retro_mputfur_878 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.92 %
• Parental protein coverage: 77.34 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LKTEFEVDLGERSGEYSCIFLPELAGRTSIQLKGPPNIKAVKRSEHGTERETVVLGCKSESFPPVREWVW
          L....EVDL...S.EY.CIFLPE....TSI..KG.PNIKA...SEH.TE.E.V.LGCK..S...V...VW
Retrocopy LEKKYEVDLDDHSSEYACIFLPEHSVKTSIEMKGLPNIKATNNSEHATEGEIVMLGCKLDS*SLVSN*VW

Parental  YK-MESSGEVISNGSQSKYLVISSETKTELHIANLDLEADPGSYACNGTSPEG-TGQAVITLRVRNRFAA
          .....S...V.SN.SQSK..V...ETK.ELHI.NLD.EADPG.YACNGT..EG.T.Q..I...V.N.FA.
Retrocopy *N>SSSRDQVLSNCSQSKSFVVALETKMELHISNLDVEADPGKYACNGTNLEGTTSQTIIVPYVKNHFAM

Parental  LWPFLGIVAEVLVLVT-VIFIYEKRRKPDEVL-DDEDAGAAPLKSSGPVNDKGKKVRQRNAN
          L.PFLG.V.EVLVL.T.VIFIYEKR.K.D.VL..D...G..PLKS.G.VN.KGK....RN.N
Retrocopy LLPFLGVVVEVLVLIT>VIFIYEKRQKLDNVL>NDDGMGSVPLKSTGHVNNKGKNICLRNSN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_878 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_878 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000019717	1 retrocopy	retro_cfam_1426,
Felis catus	ENSFCAG00000007837	1 retrocopy	retro_fcat_822,
Myotis lucifugus	ENSMLUG00000009184	1 retrocopy	retro_mluc_399,
Monodelphis domestica	ENSMODG00000006517	2 retrocopies	retro_mdom_1195, retro_mdom_1203,
Mustela putorius furo	ENSMPUG00000009950	1 retrocopy	retro_mputfur_878 ,