RetrogeneDB ID: retro_mputfur_547

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896919.1:1907566..1908386(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENO1
• Ensembl ID: ENSMPUG00000006382
• Aliases: None
• Description: enolase 1, (alpha) [Source:HGNC Symbol;Acc:3350]

Sequence

>retro_mputfur_547
GCTGACAATGACATGGCCAAACAGGAGTACACAATCCTCCCATTTGGTACAGCAAACCTCAAGAAAGTCATGTGCATTGG
AGTGGAGCTTCACCACAACCTGAAGAATATCATCAAGAAAAAATATGGGAAAGATGCCACCAACATGGAGGATGGAAGTG
TGTTGACTACTAACATCCTAAAGAATAAAAAAGCAGCTCTGAAGAATGAGACCAAGATAACCACTTACACCCATAAAGTT
GTCATTGGCATGGACATGACTGCCTTGGAGTTTTTCCAGGCAGGGAAAAGTGTGATCTGGGCTTCAGATTGTCTGATCAC
TCAAGTAGGTATATCACATCTGACAAACTGACTGACCTGTACAAATTCTTCACCAAAACTAACCAGTGGTGTCTATGGAA
CATCTCTTTAACCAAGGTGACTTGGAATCTCAAAAATAATTCACAGCCAGGACAAGAATTTAGGTGGTAGATAATGGTCT
CAACAGTTATCAACTCAAAACAGATTTCCAAGATTTCCTAAGTGAGAAATCTTATAACTTCCTCCTGCTTAAAATGAACC
AAATTGGCTCTGAGACCAAGTCTTTTCAGGCATGCAAGTTGGTCTAGTCCAATGCATGGGACTTGATGATGTCTCATCCC
TCTAGGGAGACCAAAGACACATTTGTTGCTGGCCTGGTGTTGGGGTTCTGCTCCAGACAAATCAAAAGTGGTACACCTTG
CTGATCTGAGCACTTCACCAAATATAGCCAGCACCTCAGAAATAAAGAGCCACTGGGCAGCAAGGTTAAGTTTACTGGCA
GGAACTCCAGAGACCCTATG

Alignment

ORF - retro_mputfur_547 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.96 %
• Parental protein coverage: 63.13 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  AGNKLAMQEFMILPVGAASFREAMRIGAEVYHNLKNVIKEKYGKDATNVGDEGGFAPNILENKEALELLK
          A.N..A.QE..ILP.G.A.....M.IG.E..HNLKN.IK.KYGKDATN..D......NIL.NK.A...LK
Retrocopy ADNDMAKQEYTILPFGTANLKKVMCIGVELHHNLKNIIKKKYGKDATNMEDGSVLTTNILKNKKAA--LK

Parental  NAIGKAGYTDKVVIGMDVAASEFF-RSGKY-DLDFKSPDDPSRYITPDELANLYKSFIKDY-PVVSIEDP
          N......YT.KVVIGMD..A.EFF.R.GK..DL.F...D..SRYIT.D.L..LYK.F.K...PVVS.E..
Retrocopy NETKITTYTHKVVIGMDMTALEFF>RQGKV>DLGFRLSDHSSRYITSDKLTDLYKFFTKTN<PVVSMEHL

Parental  FDQDDWEAWQKFTASAGIQVVGDDLTVTNPKR-ISKAVSEKSCNCLLLKVNQIGSVTESLQACKLAQSNG
          F.Q.D.E....FTA...I.VV...L.....K.......SEKS.N.LLLK.NQIGS.T.S.QACKL..SN.
Retrocopy FNQGDLESQK*FTARTRI*VVDNGLNSYQLKTDFQDFLSEKSYNFLLLKMNQIGSETKSFQACKLV*SNA

Parental  WGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQILRIEEELGSKAKFAGRSFRNPL
          W..M.SH.S.ET.DTF.A.LV.G.C..QIK.G.PC.SE...KY.Q.LR..E.LGSK.KF.GR..R.P.
Retrocopy WDLMMSHPSRETKDTFVAGLVLGFCSRQIKSGTPC*SEHFTKYSQHLRNKEPLGSKVKFTGRNSRDPM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_547 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_547 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003483	2 retrocopies	retro_chof_1289, retro_chof_1811,
Callithrix jacchus	ENSCJAG00000000359	4 retrocopies	retro_cjac_1963, retro_cjac_2238, retro_cjac_3891, retro_cjac_438,
Erinaceus europaeus	ENSEEUG00000008602	2 retrocopies	retro_eeur_23, retro_eeur_243,
Macropus eugenii	ENSMEUG00000005942	11 retrocopies	retro_meug_1445, retro_meug_1521, retro_meug_353, retro_meug_472, retro_meug_494, retro_meug_652, retro_meug_664, retro_meug_765, retro_meug_794, retro_meug_874, retro_meug_888,
Macropus eugenii	ENSMEUG00000007840	1 retrocopy	retro_meug_96,
Monodelphis domestica	ENSMODG00000009521	1 retrocopy	retro_mdom_1794,
Mustela putorius furo	ENSMPUG00000006382	2 retrocopies	retro_mputfur_1162, retro_mputfur_547 ,
Mus musculus	ENSMUSG00000063524	1 retrocopy	retro_mmus_109,
Oryctolagus cuniculus	ENSOCUG00000010086	1 retrocopy	retro_ocun_933,
Rattus norvegicus	ENSRNOG00000017895	1 retrocopy	retro_rnor_112,
Sarcophilus harrisii	ENSSHAG00000005522	1 retrocopy	retro_shar_304,