RetrogeneDB ID: retro_mputfur_512

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896917.1:11953665..11954019(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CD59
• Ensembl ID: ENSMPUG00000011525
• Aliases: None
• Description: CD59 molecule, complement regulatory protein [Source:HGNC Symbol;Acc:1689]

Sequence

>retro_mputfur_512
ATGGGAAGCAAAGGAGAATTCATCCTGTTTCTGCTTGTCCTGGCTGTCCTCTGCCACTCTGATCATAGCCTAACATGCTC
CATCTGTACTGAACCAGACCATGACTGCAATAAGACCACCACTTGTTCAGTTAATCTTGATATGTGTCTTTTTGTCAAAG
CTGAGCCAAAACTTGTTTACCACCAGGGTTGGAAGTTTGATAATTAAAATTACAAGTATATTTCAAAAGCCCCAGGGCTT
AAGAAGCTTGAGTACTGCTGCTGCCAGCAGGACCTGTGTAACAGAAATGCTGGGGTGAGTGTCTCCGGGAAGATGGCTCT
GCTGGCCACCCCACTGTTAGCAGTAGCCTAGACT

Alignment

ORF - retro_mputfur_512 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.41 %
• Parental protein coverage: 97.44 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MESKGGFI-FLLILAVLCRSGHSLTCYACIDSE-TCNKTTVCSVNHDACLLVKADPKLFYRQCWKFDDCS
          M.SKG.FI.FLL.LAVLC.S.HSLTC..C......CNKTT.CSVN.D.CL.VKA.PKL.Y.Q.WKFD...
Retrocopy MGSKGEFILFLLVLAVLCHSDHSLTCSICTEPDHDCNKTTTCSVNLDMCLFVKAEPKLVYHQGWKFDN*N

Parental  YLSISKALGLKKLEYSCCQKDLCNGSA--RVSGMTALMLFPLLAAALT
          Y..ISKA.GLKKLEY.CCQ.DLCN..A...VSG..AL...PLLA.A.T
Retrocopy YKYISKAPGLKKLEYCCCQQDLCNRNAGVSVSGKMALLATPLLAVA*T

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_512 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_512 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000028508	1 retrocopy	retro_cfam_1431,
Dipodomys ordii	ENSDORG00000008867	1 retrocopy	retro_dord_659,
Mustela putorius furo	ENSMPUG00000011525	1 retrocopy	retro_mputfur_512 ,
Tursiops truncatus	ENSTTRG00000016371	1 retrocopy	retro_ttru_1655,