RetrogeneDB ID: | retro_cfam_1431 | ||
Retrocopy location | Organism: | Dog (Canis familiaris) | |
| Coordinates: | 31:6310212..6310524(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CD59 | ||
| Ensembl ID: | ENSCAFG00000028508 | ||
| Aliases: | None | ||
| Description: | CD59 molecule, complement regulatory protein [Source:HGNC Symbol;Acc:1689] |
Retrocopy-Parental alignment summary:
>retro_cfam_1431
CTCTGGACAATCACAATGGGAAGCAGAGGAGGATTCACCCTGCTGATGTACATGCTGGTCCTGGCTGTTCTCTGCCATTT
AGGTAATAGCCTGACATGCTATGCCTGTACTGAACCAGAAGGTAGTTGCAGTAAGACCACCACTTGTTTGGTTAATCTTG
ATACATGTCTTTTCACCAAAGCTGAGACCCCCAAATTTTACCAGCAGTGTTAGAGGTTTGAAGATTGCAATTTCAAGTAC
ATTTCAAAAGCCTTAGGGCTTGACAAGCTAGAGAACCATTACTGCCAGCAGGACCTACGCAGCAGAAATGCT
ORF - retro_cfam_1431 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 53.85 % |
| Parental protein coverage: | 74.82 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LWTITMGSKGGFILPVLLLILAALCHSGHSLTCYSCPESEYTCNNTISCGINLDACLFIKADPLRYYYQC |
| LWTITMGS.GGF.L....L.LA.LCH.G.SLTCY.C.E.E..C..T..C..NLD.CLF.KA.....Y.QC | |
| Retrocopy | LWTITMGSRGGFTLLMYMLVLAVLCHLGNSLTCYACTEPEGSCSKTTTCLVNLDTCLFTKAETPKFYQQC |
| Parental | WRQKDCNYQYISNSFQIKKLEYYCCQKDLCNGSA |
| .R..DCN..YIS......KLE...CQ.DL....A | |
| Retrocopy | *RFEDCNFKYISKALGLDKLENHYCQQDLRSRNA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012049_cerebellum | 0 .00 RPM | 94 .92 RPM |
| SRP017611_brain | 0 .00 RPM | 72 .56 RPM |
| SRP017611_kidney | 0 .00 RPM | 126 .26 RPM |
| SRP017611_liver | 0 .00 RPM | 27 .63 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_1431 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_1431 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_1431 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Canis familiaris | ENSCAFG00000028508 | 1 retrocopy |
retro_cfam_1431 ,
|
| Dipodomys ordii | ENSDORG00000008867 | 1 retrocopy | |
| Mustela putorius furo | ENSMPUG00000011525 | 1 retrocopy | |
| Tursiops truncatus | ENSTTRG00000016371 | 1 retrocopy |